Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317F08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    30   0.18 
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    29   0.42 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    29   0.56 
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    27   1.3  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   2.2  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.2  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    26   3.0  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.2  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   5.2  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    25   9.0  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    25   9.0  
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce...    25   9.0  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   9.0  

>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 213  DDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYE-MFDKVDKFLQSHTLRVKVPEEITK 389
            ++ I I++D+S+ +T  V+D+  A+  + +D   E   D ++K        VK  E +T 
Sbjct: 884  EENIDISQDISMTETNAVDDEVQAENSILQDEVEETRQDDIEKDELEDIKEVKEDENLTT 943

Query: 390  SAASEYVP 413
               +  +P
Sbjct: 944  LEETIEIP 951


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 23/83 (27%), Positives = 38/83 (45%)
 Frame = +3

Query: 225 KITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVKVPEEITKSAASE 404
           K+ E +   K   VE +      L++ P   M +KV K       + KV E     A +E
Sbjct: 94  KVEEKVEEFKEDNVEQEIKQKRSLSESPQESMLEKVSK-------KPKVSE-----AHNE 141

Query: 405 YVPRSLLTDLPSELDMPLDGEDE 473
            +    +  + +ELD+P+ G+DE
Sbjct: 142 EISPENVETIENELDLPVKGKDE 164


>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +3

Query: 303  DPAYEMFDKVDKFLQSHTL----RVKVPEEITKSAASEYVPRSLLTDLPSELDMPLDGED 470
            D +Y  FD +    ++H +     V V   IT +   EY+ +   T L  ++ +  DG+D
Sbjct: 1018 DCSYNPFDDLQAEDRAHRVGQVREVTVIRLITDNTIEEYIQKLANTKLALDMSLSSDGKD 1077

Query: 471  EAEVVE 488
              E+ E
Sbjct: 1078 REEIGE 1083


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = +3

Query: 264 VEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSE 443
           V+   S   + AK  A+E F       +      + P    K ++ +  P++    L  +
Sbjct: 73  VKKKPSKKSKKAKANAFEAFADEQSVEEEEEEDSEKPVRKNKKSSKKASPKNAFDALADD 132

Query: 444 LD-MPLDGEDEAEVVEGRKKKIKLPK 518
           +D + LD E+E+E  E  KKK K  K
Sbjct: 133 MDDLSLD-EEESESSEKSKKKKKKSK 157


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +3

Query: 183  TLQWISSVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLR 362
            TL   SS AND+  ++T  +++  T T + D+SA   +       + D  D  L+ +  R
Sbjct: 1232 TLDGNSSSANDNTQELTNVVNVALTSTGDLDDSA---IVSKLNQILSDFRDDLLEHNVRR 1288

Query: 363  VK-VPEEITKSAASEY 407
            V  V   I KSA   Y
Sbjct: 1289 VTIVGGRINKSAYPSY 1304


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +3

Query: 267 EDDESADPRLAKDPAYEMFD-KVDKFLQSHTLRVKVPEEITKSAASEYVPR--SLLTDLP 437
           E++ +A      +P YEM    ++   +   L  K  E I     S    R   + T+L 
Sbjct: 280 EENSAASTLDDLEPQYEMTTITIEGDFEGVELAQKDIEAIINERTSNTTVRISHISTELY 339

Query: 438 SELDMPLDGEDEAEVVEGRKKKIKLP 515
           S L  P DG++  E+ EGR  K+++P
Sbjct: 340 SLLRGP-DGKNIKELEEGRDLKVQIP 364


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 2   TRPRAEFGTRGTVSNSENGQNNSVVIDR 85
           T P+A   T  TV+N+ N +NN++  D+
Sbjct: 716 TSPQALSKTNNTVNNAANTENNTLAKDK 743


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +3

Query: 189 QWISSVANDDEIKITEDL 242
           Q+I ++ NDDE+ +TE++
Sbjct: 282 QYIKNILNDDELHLTEEV 299


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 256 VFTIERSSVILISSSLATDEIHCRVLGFTHSTE 158
           + ++  S +I+ISSSL +DEI+   L F    E
Sbjct: 466 IISLWSSLMIIISSSLGSDEIYKACLLFLRKLE 498


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 387 KSAASEYVPRSLLTDL-PSELDMPLDGE 467
           ++A  +YVPR++L DL P  +D    G+
Sbjct: 53  EAAGGKYVPRAVLVDLEPGTMDAVKSGK 80


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = +3

Query: 114 SKLVKNIYNECLSQYSVECVKPRTLQWISS--VANDDEIKITEDLSIVKTGTVEDDESAD 287
           +K  K  ++E     + E  KP   +++    V + +     E L   +   V+D  S++
Sbjct: 70  TKKAKRSFDESNLSTNEEADKPVESKFVKKLKVYSKNADPSVETLQKDRVSNVDDHLSSN 129

Query: 288 PRLAKDPAYEMFDKVDK 338
           P +A++ A E+F+ + K
Sbjct: 130 PLMAEEYAPEIFEYIRK 146


>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/69 (21%), Positives = 35/69 (50%)
 Frame = +3

Query: 198 SSVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVKVPE 377
           S + N+D   ++++    K    +D E+++  L      E  +  D+F QS++   ++ E
Sbjct: 7   SQIKNEDISFVSQEDDSSKKFVKDDSENSEEEL------EDLNSEDEFYQSNSSEDEIEE 60

Query: 378 EITKSAASE 404
           E+ +S  ++
Sbjct: 61  EVQESTIAD 69


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 191 LQGPRFHAFHRILTKAFIINVLD 123
           L   RFH F R+    F++++LD
Sbjct: 130 LTDQRFHIFSRLTCAYFVLSILD 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,957
Number of Sequences: 5004
Number of extensions: 43025
Number of successful extensions: 156
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)