Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317F01f
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   219   7e-58
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    37   0.009
Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    29   1.9  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    29   2.5  
U55856-3|AAA98022.2|  472|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p...    27   7.6  
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p...    27   7.6  
U58760-9|AAK31465.1|  654|Caenorhabditis elegans Dishevelled rel...    27   7.6  
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin...    27   7.6  
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr...    27   7.6  
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr...    27   7.6  
AF036706-17|AAK39277.2|  582|Caenorhabditis elegans Enhanced rna...    27   7.6  
Z92806-3|CAB07256.1|  202|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  219 bits (536), Expect = 7e-58
 Identities = 103/119 (86%), Positives = 114/119 (95%)
 Frame = -2

Query: 426 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 247
           LE+KDPKRLFEGNALLRRLV+IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKS
Sbjct: 62  LEDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKS 121

Query: 246 IHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKG 70
           IHHARILI+Q HIRVR+QVV++PSFIVRLDS KHIDFSL+SP+GGGRPGRVKR+ LRKG
Sbjct: 122 IHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRKG 180


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 26/101 (25%), Positives = 46/101 (45%)
 Frame = -2

Query: 426 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 247
           L E DP R      +L +    G++      L+ +  +    F  RRL   +   G+ +S
Sbjct: 64  LSESDPFRSKCTEDMLTKFYAAGLVPTSDT-LERIGKVTGASFARRRLPVVMRNIGMCES 122

Query: 246 IHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 124
           +  A  L+ Q H+R+  ++V  P+F+V   S   I ++  S
Sbjct: 123 VKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKAS 163


>Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical
           protein F45D3.3 protein.
          Length = 236

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -1

Query: 346 KTDETRLCAWSE---D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPI 176
           KTDE    A S+   D    G +SA A V + P   + S  NFD  K  SC    C  PI
Sbjct: 107 KTDEIVESAESDSSSDTDYFGEASASAPVSN-PALTYLSGANFDNVKQPSCQMLGCTGPI 165


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 183 CSQLACGHEYAFAGSKFWHDG 245
           C +  CG E+ F   K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 180 GCSQLACGHEYAFAGSKFWH 239
           GC +L   +EY FA  K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358


>U55856-3|AAA98022.2|  472|Caenorhabditis elegans Hypothetical
           protein F31E8.5 protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -2

Query: 432 PPLEEKDPKRLFEGNALLRRL-VRIGVLDEKQMKLDYVLGLK 310
           PP++EKD K+  +  A L+ L ++ GVL  ++   + V GLK
Sbjct: 241 PPVKEKDAKKSIDLLAYLKTLDMKNGVLANREKTCESVGGLK 282


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = -2

Query: 312 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 187
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 164 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 205


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = -2

Query: 312 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 187
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 300 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 341


>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
           protein 70, isoform a protein.
          Length = 2257

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -1

Query: 253 EVHPSCQNFDP------AKAYSCPQASCEHPII 173
           +VH   QNFD       AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
           protein 70, isoform b protein.
          Length = 2302

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -1

Query: 253 EVHPSCQNFDP------AKAYSCPQASCEHPII 173
           +VH   QNFD       AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>U58760-9|AAK31465.1|  654|Caenorhabditis elegans Dishevelled
           related protein 2 protein.
          Length = 654

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 438 PGPPLEEKDPKRLFEGNALLRRLVRIGVLDE 346
           P PP         FEG  ++R + R+GV++E
Sbjct: 604 PQPPTAGAVQSSKFEGREMIREVKRVGVVEE 634


>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
           protein.
          Length = 2257

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -1

Query: 253 EVHPSCQNFDP------AKAYSCPQASCEHPII 173
           +VH   QNFD       AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
           protein.
          Length = 2257

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -1

Query: 253 EVHPSCQNFDP------AKAYSCPQASCEHPII 173
           +VH   QNFD       AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
           protein.
          Length = 2302

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -1

Query: 253 EVHPSCQNFDP------AKAYSCPQASCEHPII 173
           +VH   QNFD       AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>AF036706-17|AAK39277.2|  582|Caenorhabditis elegans Enhanced rnai
           (rna interference)protein 1, isoform b protein.
          Length = 582

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 348 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 193
           EK    +Y+   + EDF +   +  +FK G  KS   AR +I    + V  +
Sbjct: 427 EKMAIREYLENKQTEDFAKIAAERGIFKIGEIKSYQTARPIIEDDDVDVESE 478


>Z92806-3|CAB07256.1|  202|Caenorhabditis elegans Hypothetical
           protein K10G4.3 protein.
          Length = 202

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -2

Query: 423 EEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 259
           +EK  K ++E N  LR    I    +  ++L  ++  +IEDF+E  L   + K G
Sbjct: 138 KEKIRKNVYERNEQLRDFKNIPYGFQPTLELHNLMQDQIEDFIEEYLGQYLEKLG 192


>AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical
           protein C54G6.2 protein.
          Length = 700

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 270 TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEG 386
           T A     PR P+SS   H+RV + +    + + DD EG
Sbjct: 89  TEAHRYHPPRQPRSSAPTHHRVPADYPSDEEDDYDDTEG 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,723,936
Number of Sequences: 27780
Number of extensions: 223295
Number of successful extensions: 704
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)