Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317E12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    27   1.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   3.9  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   6.8  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   9.0  

>SPCC1682.05c |||signal recognition particle subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = -2

Query: 331 WEWTRNMNKLIIDNTILQ--RQYQ--E*C*KELAYSVLPLKLQRNL 206
           W     + K ++DNT L+  +++Q    C   LAY+V+ L++QR+L
Sbjct: 330 WARAEEITKSVLDNTGLEDEQKFQTLSICYTYLAYNVVLLRIQRDL 375


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -1

Query: 269  SRIMLKRISIFSLASEITKKFAAHIFIGNWEKQNSLE 159
            S++  KR++      E+ +K+   +F+G W  Q  ++
Sbjct: 1417 SKVEHKRLAQEWAGLEVNEKYDLLVFVGRWSSQKGID 1453


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 366 LFSVQTSYSLNFNFRLNQFCITTSIDLVFASTTHHGYLLISLFIVC 503
           L  +Q  + L     LNQ  I++ +D++ +  TH     + L I C
Sbjct: 34  LARLQQFHKLCSEVGLNQHSISSLLDVILSKKTHFDKNHVQLLIKC 79


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 363 PLFSVQTSYSLNFNFRLNQFCITTSIDLVFA-STTHHGYLLISLFI 497
           PL+   + +S  FNF L+    ++ +DL+ A +    G+ L+S ++
Sbjct: 514 PLYVASSIFSKLFNFSLDLIKSSSKLDLLAAQAQIKTGWRLLSAYV 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,996
Number of Sequences: 5004
Number of extensions: 32654
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)