Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317E12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.62 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.4  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.7  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 498 Q*ITKLINSHDESSMRKLNRWMWLCRTDS 412
           Q + KL+   D +S+ +L+ WM L  TDS
Sbjct: 74  QLLPKLMEFDDWTSVMELHSWMTLMWTDS 102


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +1

Query: 136 LISREQNCSKLFCFSQFPIKICAANFFVISEARLNMLILFNI 261
           ++S   NC  ++ FS        +N F++S A  ++++ F +
Sbjct: 69  IMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFEM 110


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +1

Query: 361 DRYFRSKPPI 390
           +R+F+SKPP+
Sbjct: 552 ERFFKSKPPV 561


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +1

Query: 136 LISREQNCSKLFCFSQFPIKICAANFFVISEARLNMLILFNI 261
           ++S   NC  ++ FS        +N F++S A  ++++ F +
Sbjct: 69  IMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFEM 110


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = -2

Query: 331 WEWTRNMNKLIIDNTILQRQYQE*C*KE-----LAYSVLPLKLQRNLLH 200
           ++ TRN+ +L+ D   LQ+ Y+E   ++     L YSVLP+ +   L H
Sbjct: 353 YKLTRNL-ELLTDK--LQQTYRELDGEKQKTDRLLYSVLPISVANELRH 398


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = -2

Query: 331 WEWTRNMNKLIIDNTILQRQYQE*C*KE-----LAYSVLPLKLQRNLLH 200
           ++ TRN+ +L+ D   LQ+ Y+E   ++     L YSVLP+ +   L H
Sbjct: 353 YKLTRNL-ELLTDK--LQQTYRELDGEKQKTDRLLYSVLPISVANELRH 398


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,064
Number of Sequences: 438
Number of extensions: 2453
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)