Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS317E05f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 262 2e-71
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 28 0.73
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 25 5.2
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 25 6.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 9.0
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi... 25 9.0
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 25 9.0
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 262 bits (642), Expect = 2e-71
Identities = 126/174 (72%), Positives = 141/174 (81%), Gaps = 1/174 (0%)
Frame = +2
Query: 2 NVEQARDAMFSGQKINFTEDRAVLHIALRNRQNKPILVNGKDVSTDVNAVLEHMKEFSDQ 181
NVE RDA+F+G+ INFTEDRAV H ALRN KP+ VNG+DV V VL HMKEFSD
Sbjct: 81 NVEGLRDALFAGEHINFTEDRAVFHPALRNVSEKPMKVNGQDVMPGVRKVLRHMKEFSDA 140
Query: 182 VVSGQWKGYTGKAITDVINIGIGGSDLGPLMVTEALKPYA-NHLKVHFVSNIDGTHLAEV 358
V SG WKGYTGK I ++N+GIGGSDLGP+MVTEALKPY +L++HFVSNIDGTHLAE
Sbjct: 141 VRSGAWKGYTGKPIKSIVNVGIGGSDLGPVMVTEALKPYGQENLELHFVSNIDGTHLAEA 200
Query: 359 LKKLNPETALFIIASKTFTTQETITNASSAKTWFLESAKDPSAVARHFVALSTN 520
LKK +PET LF+IASKTFTT ET TNA SAK WFL SAKDPS VA+HFVALSTN
Sbjct: 201 LKKCDPETTLFLIASKTFTTAETCTNAKSAKDWFLASAKDPSHVAKHFVALSTN 254
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 28.3 bits (60), Expect = 0.73
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
Frame = +2
Query: 83 LRNRQN--KPILVNGKDVSTDVNAVLEHMKEFSDQVVSGQWKGYTGKAITDVINIGIGGS 256
+ NR N KP+ + KD + EH K+ D +SG G +++ IN
Sbjct: 668 ITNRLNAKKPLFIESKDFGDNPLDTFEHYKQSVDAGLSGMLFSVIGGRLSEGINF---SD 724
Query: 257 DLGPLMVTEALKPYANHLKVHFVSNIDGTHLAEVLKKLNPETA 385
LG ++ + P+ N V + + + K +N + A
Sbjct: 725 KLGRAVMVVGM-PFPNSQDVEWQAKVSYVEEKAKEKGINAKQA 766
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 53 TEDRAVLHIALRNRQNKPILVNGKDVSTDVNAVLEHMKEFS 175
T LH+A R Q KP N + V + ++ K FS
Sbjct: 173 TNSNIKLHLAARKYQTKPEKFNENSSISQVTSAIKATKAFS 213
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +2
Query: 5 VEQARDAMFSGQKINF-TEDRAVLHIALR-NRQNKPILVNGKDVSTDVNAVLEHMKEFSD 178
+E + FSG KI+ T +++ + NR + +L+ K ++ +++ V E K+F+
Sbjct: 247 IELDEGSSFSGPKISARTSSGKIIYFPKKKNRHSDGLLLQPKRLADEISQVNEIGKDFNQ 306
Query: 179 QVVS 190
+++
Sbjct: 307 DLLN 310
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 377 ETALFIIASKTFTTQETITNASSAKTWFLESAKDPSAVA 493
ET+ I S T T++SSA +W S DPS A
Sbjct: 931 ETSSSAITSSV-AASVTPTSSSSASSWSSSSEVDPSTAA 968
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -2
Query: 142 DISADILTVHQDRLVLTVTQSYMQYCPVFCEVYLLT*EHG 23
++ + H D L V + Q PV CE+ + EHG
Sbjct: 202 ELKMHLSKAHDDLNPLKVLNLFKQITPVDCELLGMDPEHG 241
>SPBC1539.01c |||mitochondrial ribosomal protein subunit
L15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +2
Query: 347 LAEVLKKLNPETA 385
LAEV KK NPETA
Sbjct: 131 LAEVAKKWNPETA 143
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 269 LMVTEALKPYANHLKVHFVSNIDGTHLAEVLKKLN 373
+ V+ L P+A+H K + +HL EV K N
Sbjct: 311 MRVSSDLFPFASHAKYGYTLEFAQSHLEEVGKLAN 345
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,886
Number of Sequences: 5004
Number of extensions: 38612
Number of successful extensions: 122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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