Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317E04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   3.9  
SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.0  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   9.0  

>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 375 EIFVGTDLRGFLARCAAFFLHLLTFFIYRVFLIFSLLL 262
           E+FVG  L   +     FFL +  F+    FL F  LL
Sbjct: 11  EVFVGFSLCTLVISVPFFFLQMTPFYSILCFLSFFALL 48


>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 100

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 156 FNTPLHKN*IRQFIKTNNTWEPMFNILLFHLCNHSRF 46
           F+  +H + I  F+K N+++ P   I+ FH  N  RF
Sbjct: 7   FSNHIHYHFIISFMKMNDSYTPYTYIVSFH--NFVRF 41


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 95  SQCLIFYYFIYVTILDLISIIAFVVLEKIIK 3
           S  L+F YF    I+ L+S + F  L  I K
Sbjct: 57  SHSLLFVYFFLTLIILLVSFMGFHYLNSIPK 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,057
Number of Sequences: 5004
Number of extensions: 36129
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)