Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317D06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   3.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   3.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   5.8  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   7.7  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   7.7  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   7.7  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 68  RHEAEVDETLKKKRIFRKFTY-RGVDL 145
           RH A++D   K+K+IF    Y R  DL
Sbjct: 25  RHTADMDFLHKQKKIFDLLLYVRQADL 51


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 68  RHEAEVDETLKKKRIFRKFTY-RGVDL 145
           RH A++D   K+K+IF    Y R  DL
Sbjct: 25  RHTADMDFLHKQKKIFDLLLYVRQADL 51


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 99  RKSVFSGSSLTGELISISSLICPMSNSW 182
           RKS  S +SL   LI   ++ CP+  SW
Sbjct: 226 RKSP-SLTSLNAYLIKNQTITCPIKVSW 252


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 99  RKSVFSGSSLTGELISISSLICPMSNSW 182
           RKS  S +SL   LI   ++ CP+  SW
Sbjct: 226 RKSP-SLTSLNAYLIKNQTITCPIKVSW 252


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 99  RKSVFSGSSLTGELISISSLICPMSNSW 182
           RKS  S +SL   LI   ++ CP+  SW
Sbjct: 277 RKSP-SLTSLNAYLIKNQTITCPIKVSW 303


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 99  RKSVFSGSSLTGELISISSLICPMSNSW 182
           RKS  S +SL   LI   ++ CP+  SW
Sbjct: 226 RKSP-SLTSLNAYLIKNQTITCPIKVSW 252


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 454 CKAR*TRYRCYTQLKVHS 507
           CKA    + C  QLKVH+
Sbjct: 206 CKACGKGFTCSKQLKVHT 223


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = +1

Query: 238 NGIGQEAASRQERGSSE*EARDREDSLEKHDHRSRDGRFNCRHLQRKNF 384
           N    E   R+ R +S+  +RDR++  +  +H+      N  +    N+
Sbjct: 48  NSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNY 96


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = +1

Query: 238 NGIGQEAASRQERGSSE*EARDREDSLEKHDHRSRDGRFNCRHLQRKNF 384
           N    E   R+ R +S+  +RDR++  +  +H+      N  +    N+
Sbjct: 48  NSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNY 96


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = +1

Query: 238 NGIGQEAASRQERGSSE*EARDREDSLEKHDHRSRDGRFNCRHLQRKNF 384
           N    E   R+ R +S+  +RDR++  +  +H+      N  +    N+
Sbjct: 48  NSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNY 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,767
Number of Sequences: 438
Number of extensions: 2279
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)