Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS317D05f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch... 31 0.079
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 29 0.42
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 29 0.42
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 25 5.2
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 25 5.2
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 25 6.8
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 6.8
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces... 25 9.0
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 25 9.0
>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 31.5 bits (68), Expect = 0.079
Identities = 25/86 (29%), Positives = 41/86 (47%)
Frame = +2
Query: 254 SIGQCIKTVLRRACVEKRLTIGLLPAIQYLSKNCNGALFCLTAEAPPGDSATHMQDVLLQ 433
S+ +K VL+RA V L G+ A + L + A C+ E+ D +++ L++
Sbjct: 28 SVEDALKEVLKRALVHDGLARGIREASKALDRR--QAHLCVLCESC--DQEAYVK--LVE 81
Query: 434 AFCVENDIHVIKVDCETKLRRMLGYC 511
A C E++ +IKV L G C
Sbjct: 82 ALCAESETPLIKVADPKVLGEWAGLC 107
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 29.1 bits (62), Expect = 0.42
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +2
Query: 137 RSLEISEIQELRSIRLSKMYKEAVVPV-KAETFSVIAAKSSIGQCIKTVLRRACVEKRLT 313
+ L +++ ++ + ++ E+ + KAE FS A SIG+ K +L + K+L
Sbjct: 1317 QGLSKDKVRRIKPCTIESLFNESTLRSGKAERFSENAGVESIGKKGKNLLNESGNGKKLD 1376
Query: 314 IGLLPAIQYLSKNCNG 361
GL P + S G
Sbjct: 1377 KGLPPKVNGKSSVTRG 1392
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 29.1 bits (62), Expect = 0.42
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = -2
Query: 514 RAVTKHSPQLSLTIDFNNMNIIFNAKCLQEDILHMRCTIARRGFGGQAKQCTIAVLR*VL 335
R +T+HS ++S I + ++ ++F A Q + + A F G + TIAV ++
Sbjct: 82 RYLTEHSSRISFYICYFSIFLLFFAISFQAECYYSLTAYATSAFAGHSLLSTIAVANNII 141
Query: 334 N 332
+
Sbjct: 142 S 142
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 161 EFH*FPNSAVKSECEFSQKALTLYIKSFYYVNTLELLAV 45
+F P + EC + KA T I + +Y+N + L +
Sbjct: 119 DFKVIPEKDLPGECIYGHKATTFLINAPHYLNYMYKLLI 157
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = -1
Query: 149 FPNSAVKSECEFSQKALTLYIKSFYYVNTLELLAVIRTCDTIISQL 12
F ++ + S +K LTL++ SF+ ++ + C ++S L
Sbjct: 334 FSSTIIASFSSLLKKLLTLFVLSFFVYPLVQEFCLFLACSFVVSFL 379
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 419 DVLLQAFCVENDIHVIKVDCETKL 490
D+ ++ ++ + HVIK DCE +L
Sbjct: 224 DLPIEHEVIQTEYHVIKSDCEAEL 247
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 280 VKASLCRKKVNY-WLTSRHSILIEELQWCIVLPDRRSPAWR*CNAYARCPPASILR 444
VK S + + Y W T + IL QW I L + R A + ++ PP S R
Sbjct: 415 VKVSPYKHRYPYDWRTHKPLILRATPQWFISLENERKTAIKALDSVKMIPPNSRAR 470
>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 24.6 bits (51), Expect = 9.0
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +2
Query: 224 ETFSVIAAKSSIGQ--CIKTVLRRACVEKRLTIGLLPAIQY-LSKNCNGALFCLTAEAPP 394
E FS++ K S GQ CI+ + + + G+L + ++ G ++ ++A P
Sbjct: 335 EEFSILQTKVSPGQKQCIRGINGPSILLVTEGSGILNGDKGDVASISPGFVYFISANFPL 394
Query: 395 GDSATHMQDVLLQAFC 442
SAT V+ QAFC
Sbjct: 395 TISATSEPVVVYQAFC 410
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 107 SVKIHIRISLRSLEISEIQELRSIRLSKMY 196
S +H++ ++R + QE+RSIRL+ MY
Sbjct: 364 SCPLHVQEAIRK---RQEQEIRSIRLNSMY 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,056,714
Number of Sequences: 5004
Number of extensions: 39811
Number of successful extensions: 93
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -