Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317D01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   5.2  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    25   5.2  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   6.8  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.8  

>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 51  SWRSYGTTNDDGSTWANAANDGNETAYDGPH 143
           S+  +   NDD   WA AA D  E  +  P+
Sbjct: 101 SFEYFNLGNDDQGMWAAAAMDAAEANFSPPN 131


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 514 LLNKIEIKSSNENICINLLFYLLECNL*N 428
           L N++ + SS  + C+    YL  CNL N
Sbjct: 96  LSNEVNLTSSTTSSCVKPSPYLTNCNLKN 124


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 415 WLINKLSS*ICNSQWKNFRFLFFQCYLNITPSLPN 311
           W IN LSS I  +    F F+   C+L    S PN
Sbjct: 436 WDINMLSSMITMTFLLTFGFINLSCFLLRISSTPN 470


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 385 CNSQWKNFRFLFFQCYLNITPSLPNSLTFMNIKIATLSLQ 266
           C+S    F+F   +     +PSLP S T++ I  A LS+Q
Sbjct: 501 CSSCKYPFQFFINKLPFYQSPSLPLSATYVWIASALLSVQ 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,664,187
Number of Sequences: 5004
Number of extensions: 29964
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)