Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317D01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496...    27   6.9  
02_01_0023 + 146841-147002,147962-148036,148181-148234,148284-14...    27   6.9  

>02_05_1147 -
           34447519-34448042,34448126-34449092,34449458-34449657,
           34449867-34450051,34450130-34450228,34450316-34450357,
           34450516-34450860,34450956-34451101,34451213-34451296,
           34451424-34451502,34451596-34451675,34451824-34451875,
           34451992-34452026
          Length = 945

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 15  WSSRYDTSSIYGSWRSYGTTNDD 83
           + SRYD  + YG  R YG  +DD
Sbjct: 185 YGSRYDNRNGYGGEREYGYRDDD 207


>02_01_0023 +
           146841-147002,147962-148036,148181-148234,148284-148388,
           148736-148836,148937-148992,149284-149324,149427-149527,
           149629-149724,149905-149969,150048-150119,150537-150772,
           150874-150904,151020-151165,151264-151365,151469-151513,
           151614-151780,151812-152214
          Length = 685

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 106 AALAHVDPSSLVVP*DLQDP 47
           A LAHV+P++ +VP DL  P
Sbjct: 641 ARLAHVEPAAAIVPQDLTPP 660


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,728,185
Number of Sequences: 37544
Number of extensions: 157920
Number of successful extensions: 400
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)