Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317C12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...   139   3e-34
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    27   2.2  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   5.2  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   6.8  
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   6.8  
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe...    25   9.0  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   9.0  

>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score =  139 bits (336), Expect = 3e-34
 Identities = 68/102 (66%), Positives = 79/102 (77%), Gaps = 1/102 (0%)
 Frame = +1

Query: 217 LDKNFEEFDPQKEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWE 396
           L K  +E D   E +LR NP RFV+FPI+Y +IWQ YKKAEASFWT EE+DLSKDL DW+
Sbjct: 57  LGKKEDELD---EVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWD 113

Query: 397 T-LKDSERHFIKHVLAFFAASDGIVNENLVERFSQEVQVTEA 519
             L   ER+FI  VLA+FAASDGIVNENL+ERFS EVQ+ EA
Sbjct: 114 NKLNADERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEA 155


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 160 PMKNSVLATKN-DNLTEEMDLDKNFEEFDPQKEPLL 264
           P  N +L T + D L   +D  K  +  DP+++PLL
Sbjct: 156 PKDNELLLTGSVDGLVSLLDTTKEEDSTDPEEDPLL 191


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 448 AASDGIVNENLVERFSQEVQ 507
           A +DGI+N+N++E   + VQ
Sbjct: 281 AVADGIMNDNVLESIGENVQ 300


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 106 KENLHSGINGENRVQTKSPMKNSVLATKNDNLTE 207
           ++ LH  IN +N  Q++S      ++   DNL E
Sbjct: 527 EDELHEAINSKNVQQSRSEELEQQISKLTDNLQE 560


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 127 INGENRVQTKSPMKNSV--LATKNDNLTEEMDLDKNFEEFDPQKEPLLRENP 276
           ++ ++++  K  +K+ V    T NDN+T    + KNF E+ P    +   NP
Sbjct: 18  VSEDDKILIKPCIKSEVDFYKTCNDNITLYNWIPKNFGEWMPSSRDIEGINP 69


>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 229

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 133 GENRVQTKSPM-KNSVLATKNDNLTEEMDLDKNFEEFDPQKE 255
           GE+  Q ++P  K+++L  +ND+  E+   ++NF   D + +
Sbjct: 37  GEDAGQFETPEDKDALLNFENDSEAEQTRFEQNFPPIDAEMQ 78


>SPCC1795.08c |||histone acetyltransferase complex subunit
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +1

Query: 73   ERQ*TMAPTVDKENLH-SGINGENRVQTKSPMKNSVLATKNDNLTEEMDLDKNFEEFDPQ 249
            +R+    PT+ K  +  S  + E      SP++ S L ++ +   +++   +NF +   Q
Sbjct: 840  KREFAKKPTMTKRAIAPSAASTEKLPPVPSPLELSRLKSEREAQIQQIQAQRNFAQLQSQ 899

Query: 250  KEPLLREN 273
               L  +N
Sbjct: 900  NRALRPQN 907


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,077,169
Number of Sequences: 5004
Number of extensions: 42080
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)