Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS317C12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1045 - 8241862-8242881 127 6e-30
06_01_0189 + 1470006-1470989 126 1e-29
06_03_0107 + 16709543-16709640,16712555-16713408,16715051-167151... 31 0.56
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 30 0.98
05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842... 29 1.7
07_01_0698 - 5269329-5269579,5270673-5270928,5271158-5271725,527... 29 2.3
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 29 3.0
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 28 5.2
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 27 6.9
05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-23... 27 6.9
04_04_1287 - 32390422-32391588,32392472-32392645 27 6.9
06_03_0497 + 21424732-21424899,21424992-21425057,21425176-214256... 27 9.1
01_07_0170 - 41670694-41671634,41672014-41672982,41673050-41673605 27 9.1
>06_01_1045 - 8241862-8242881
Length = 339
Score = 127 bits (306), Expect = 6e-30
Identities = 60/91 (65%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Frame = +1
Query: 250 KEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWE-TLKDSERHFI 426
+EPLL E+ RF +FPI+YP IW+ YKKA ASFWT EEVDLS D W+ L ERHFI
Sbjct: 14 EEPLLAESSERFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDAALSPDERHFI 73
Query: 427 KHVLAFFAASDGIVNENLVERFSQEVQVTEA 519
HVLAFFAASDGIV ENL RF +VQV EA
Sbjct: 74 SHVLAFFAASDGIVLENLASRFMSDVQVAEA 104
>06_01_0189 + 1470006-1470989
Length = 327
Score = 126 bits (303), Expect = 1e-29
Identities = 59/91 (64%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Frame = +1
Query: 250 KEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWE-TLKDSERHFI 426
+EPLL E+ RF +FPI+YP IW+ YKKA ASFWT EEVDLS D W+ L ERHF+
Sbjct: 2 EEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDAALSPDERHFV 61
Query: 427 KHVLAFFAASDGIVNENLVERFSQEVQVTEA 519
HVLAFFAASDGIV ENL RF +VQV EA
Sbjct: 62 SHVLAFFAASDGIVLENLASRFMSDVQVAEA 92
>06_03_0107 +
16709543-16709640,16712555-16713408,16715051-16715193,
16715312-16715573,16715835-16716150,16716257-16716383,
16717088-16717149,16717291-16717374,16717438-16717494,
16717705-16717768,16718057-16718152
Length = 720
Score = 31.1 bits (67), Expect = 0.56
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +1
Query: 112 NLHSGINGENRVQTKSPMKNSVLATKNDNLTEEM-DLDKNFEEFDPQKEPLLRENPRRFV 288
++H R+ + P +N+V+ T++D+L E + D + + + E RENP
Sbjct: 45 DIHHTDPSVERLPVQLPFENNVIFTEDDDLEEVIEDPNSSTTKLTAWLEAN-RENPSARQ 103
Query: 289 IFPIQYPDIWQMYKKAEASFW 351
+ I+YP+ W + + +W
Sbjct: 104 LTYIEYPEHWTWHN--QGKYW 122
>04_03_0018 -
9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 30.3 bits (65), Expect = 0.98
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = -2
Query: 508 LELLVKISQPSFHLQCHLKPQRKQGHA**NVSHYLLKSPSLINPWTNRLPRRSKTKLQLS 329
L + +SQ SF + P H + H+ L PSLI PW RL + + ++
Sbjct: 801 LRTVSSLSQSSFEEYLDISPPSPTFHEK-HQQHFNLDPPSLIPPWQLRLAKTKENEI-YP 858
Query: 328 CTFA 317
CT +
Sbjct: 859 CTLS 862
>05_03_0104 -
8426374-8426542,8426656-8426828,8427020-8427103,
8427110-8427205,8427530-8427616,8428639-8428767,
8428922-8429098,8429185-8429295,8429642-8429761,
8430767-8432427,8432485-8432867,8433707-8434470,
8434532-8434813,8436158-8436493
Length = 1523
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = -3
Query: 330 LVHLPYIGVLNREDDKAPRVLTQQRFLLWVEL-----FEIFIEVHFLSQIVIFRSQYTI 169
L+HL Y+G+++ K PR + +FL ++L E+ EV L+Q+V R+ + I
Sbjct: 769 LLHLRYLGLVDTYITKLPREVRYLKFLQTLDLRGSRIKELPEEVGLLTQLVCLRADWEI 827
>07_01_0698 -
5269329-5269579,5270673-5270928,5271158-5271725,
5271757-5272763
Length = 693
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 212 ISSVKLSFFVANTLFFMGDFVCTRFSPLIP 123
IS+ LS VA +L+ + F+CTR+ L P
Sbjct: 342 ISTTMLSCIVARSLYGLVSFLCTRYRGLTP 371
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 28.7 bits (61), Expect = 3.0
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Frame = +1
Query: 103 DKENLHSGINGENRVQTKSPMKNSVLATKNDNLTEEMDLDK----NFEEFDPQKE 255
D N S GE S KN +K + EEMDLDK EE DP+ E
Sbjct: 448 DMTNAVSEDGGEKEKNDTSAKKNKKKKSKAEADGEEMDLDKPAKVAAEETDPENE 502
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 205 EEMDLDKNFEEFDPQKEPLLREN 273
E +D++K+F +FD Q P+ R+N
Sbjct: 718 EFLDVEKDFSKFDIQHPPITRQN 740
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +1
Query: 262 LRENPRRFVIFPIQYPDIWQMYKKAEAS---FWTVEE 363
L+ +P+R V+ +Q PDI + K A+ +WT+++
Sbjct: 369 LQHDPQRMVLEALQQPDILGVVKHLAAAGFVYWTIDD 405
>05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-233882,
234341-234412,234485-234548,234632-234699,234894-235129,
236857-237166,237495-238460,238752-238931,239041-239346,
239593-239727,239810-240046,240120-240308,240521-240709,
240929-241024,241117-241323,241700-241893,242979-243216
Length = 1400
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 310 DIWQMYKKAEASFWTVEEVDLSKDLSDWETLKDSERHFIK--HVLAFFAASDGIVNE 474
DIWQ+ KA+ W E+ +K + ++LK++ + ++ H L+ DG NE
Sbjct: 1246 DIWQVLAKAKYQDW---EIHSTKRVWKMQSLKEACENALQEHHFLSGTLVGDGSTNE 1299
>04_04_1287 - 32390422-32391588,32392472-32392645
Length = 446
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 109 ENLHSGINGENRVQTKSPMKNSVLATKNDNLTEEMDLDKNFE 234
+N + + G + +++ P + LA DN TEE+D + E
Sbjct: 294 DNSNDALEGSHLGKSELPQWSPKLADSQDNSTEELDSTRQLE 335
>06_03_0497 + 21424732-21424899,21424992-21425057,21425176-21425634,
21425945-21426088,21426172-21426306,21426418-21426808,
21427256-21427428,21427508-21427615,21427715-21427810,
21427896-21428003,21428644-21428792,21428924-21428925,
21429071-21429207,21429538-21429842,21430922-21431099,
21431192-21431305,21431373-21431504,21431610-21431843
Length = 1032
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 205 EEMDLDKNFEEFDPQKEPLLRENPRRFVIFP 297
E D++K+F +FD Q P+ R+N I P
Sbjct: 965 EFSDVEKDFSKFDIQYPPITRQNNGELPINP 995
>01_07_0170 - 41670694-41671634,41672014-41672982,41673050-41673605
Length = 821
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 160 PMKNSVLATKNDNLTEEMDLDKNFEEFDPQKEPL 261
P++ + A N+N ++++NF F+P K P+
Sbjct: 782 PIETYIFAMFNENEKTGDEIERNFGLFEPDKSPV 815
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,785,855
Number of Sequences: 37544
Number of extensions: 244528
Number of successful extensions: 610
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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