Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS317C12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35637-2|CAA84688.1| 381|Caenorhabditis elegans Hypothetical pr... 141 2e-34
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 32 0.29
AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical ... 30 0.87
AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical ... 30 0.87
AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical ... 30 0.87
U61956-5|AAB03178.2| 286|Caenorhabditis elegans Serpentine rece... 28 4.7
Z72505-3|CAA96610.1| 340|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z81516-1|CAB04203.1| 521|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z81132-6|CAB03437.1| 315|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p... 27 8.1
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr... 27 8.1
U28929-4|AAA68347.3| 338|Caenorhabditis elegans Hypothetical pr... 27 8.1
AF125461-2|AAK18994.1| 158|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z35637-2|CAA84688.1| 381|Caenorhabditis elegans Hypothetical
protein C03C10.3 protein.
Length = 381
Score = 141 bits (342), Expect = 2e-34
Identities = 70/148 (47%), Positives = 98/148 (66%), Gaps = 3/148 (2%)
Frame = +1
Query: 85 TMAPTVDKENLHSGI--NGENRVQTKSPMKNSVLATKNDNLT-EEMDLDKNFEEFDPQKE 255
T V+KEN + + + N+++ + ++ + + + EE + + E D E
Sbjct: 4 TEIQNVEKENAGASVPKHSSNKLKLEKELEKLEIVDQTKAASAEETNNESEVNELDAD-E 62
Query: 256 PLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWETLKDSERHFIKHV 435
P+L++ RFVIFP+++ DIW YKKA ASFWTVEEVDL KD++DWE + E++FI +
Sbjct: 63 PMLQDLDNRFVIFPLKHHDIWNFYKKAVASFWTVEEVDLGKDMNDWEKMNGDEQYFISRI 122
Query: 436 LAFFAASDGIVNENLVERFSQEVQVTEA 519
LAFFAASDGIVNENL ERFS EVQV+EA
Sbjct: 123 LAFFAASDGIVNENLCERFSNEVQVSEA 150
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 31.9 bits (69), Expect = 0.29
Identities = 22/86 (25%), Positives = 39/86 (45%)
Frame = +1
Query: 154 KSPMKNSVLATKNDNLTEEMDLDKNFEEFDPQKEPLLRENPRRFVIFPIQYPDIWQMYKK 333
K+ K+ V TK + +EMDL++ F + Q + ++N ++ P Y +I KK
Sbjct: 2693 KAEQKDFVYRTKTEEEKDEMDLEEFFANHE-QDHQVQKKNRKKCSKNPSNYANILMKIKK 2751
Query: 334 AEASFWTVEEVDLSKDLSDWETLKDS 411
+ + D+S L E + S
Sbjct: 2752 PTFLIQVLPDCDVSMLLESVERKRSS 2777
>AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical
protein C53H9.2c protein.
Length = 247
Score = 30.3 bits (65), Expect = 0.87
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +1
Query: 142 RVQTKSPMKNSVLATKNDNLTEEMDLDKNFEEFDPQKEPLLRENPRRFVIFPIQYPDIWQ 321
RV KS + ++ +N L DLD +E DP K+ LL N + ++ P Q W+
Sbjct: 7 RVVEKSDIIVQIVDARNPLLFRSKDLDDYVKEVDPAKQILLLVN-KADLLKPEQQAS-WR 64
Query: 322 MYKKAE---ASFWT-VEEV 366
Y + E FW+ ++EV
Sbjct: 65 EYFEKENIKVIFWSAIDEV 83
>AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical
protein C53H9.2b protein.
Length = 385
Score = 30.3 bits (65), Expect = 0.87
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +1
Query: 142 RVQTKSPMKNSVLATKNDNLTEEMDLDKNFEEFDPQKEPLLRENPRRFVIFPIQYPDIWQ 321
RV KS + ++ +N L DLD +E DP K+ LL N + ++ P Q W+
Sbjct: 7 RVVEKSDIIVQIVDARNPLLFRSKDLDDYVKEVDPAKQILLLVN-KADLLKPEQQAS-WR 64
Query: 322 MYKKAE---ASFWT-VEEV 366
Y + E FW+ ++EV
Sbjct: 65 EYFEKENIKVIFWSAIDEV 83
>AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical
protein C53H9.2a protein.
Length = 554
Score = 30.3 bits (65), Expect = 0.87
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +1
Query: 142 RVQTKSPMKNSVLATKNDNLTEEMDLDKNFEEFDPQKEPLLRENPRRFVIFPIQYPDIWQ 321
RV KS + ++ +N L DLD +E DP K+ LL N + ++ P Q W+
Sbjct: 176 RVVEKSDIIVQIVDARNPLLFRSKDLDDYVKEVDPAKQILLLVN-KADLLKPEQQAS-WR 233
Query: 322 MYKKAE---ASFWT-VEEV 366
Y + E FW+ ++EV
Sbjct: 234 EYFEKENIKVIFWSAIDEV 252
>U61956-5|AAB03178.2| 286|Caenorhabditis elegans Serpentine
receptor, class x protein20 protein.
Length = 286
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = -3
Query: 330 LVHLPYIGVLNREDDKAPRVLTQQRFLLWVELFEIFIEVHFLSQIVIFRSQYTIF 166
L+ L ++G L D K P L++ L+ + +FE+ +++F++ S Y IF
Sbjct: 55 LLFLVFVGPLQLTDLKLPYELSRFVGLISMIIFEVSAQLNFINSFNRVFSVYVIF 109
>Z72505-3|CAA96610.1| 340|Caenorhabditis elegans Hypothetical
protein C50C10.4 protein.
Length = 340
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -1
Query: 224 LSRSISSVKLSFFVANTLFFMGDF 153
+ R+I + + +F+ NTLFF+GD+
Sbjct: 65 MDRNIFAFIMFYFLFNTLFFVGDY 88
>Z81516-1|CAB04203.1| 521|Caenorhabditis elegans Hypothetical
protein F26H9.2 protein.
Length = 521
Score = 27.1 bits (57), Expect = 8.1
Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 12/147 (8%)
Frame = +1
Query: 70 VERQ*TMAPTVDKENLHSGINGENRVQTKSPMKNS--VLATK-NDNLTEEMDLDKNF--- 231
V R+ TMA +D + ING+ K MK + LA K ++ T E D+N
Sbjct: 355 VARRDTMALKLDAPPCKNDINGQTADDRKKLMKTASIKLARKLSERPTPEELEDRNILRR 414
Query: 232 ------EEFDPQKEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDW 393
E + +++ LLR+ R I ++ I Q E T EV K W
Sbjct: 415 RGMTSSEAMEEKRKLLLRKLSFRPTIKELKEQQIIQFADYVEV---TQAEVYDRKTDKPW 471
Query: 394 ETLKDSERHFIKHVLAFFAASDGIVNE 474
L S++ I+ L F A++ V+E
Sbjct: 472 TRLTPSDKAMIRKELNDFKATEMDVHE 498
>Z81132-6|CAB03437.1| 315|Caenorhabditis elegans Hypothetical
protein T26E4.8 protein.
Length = 315
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 139 FHR*FRYEDSLYQQ*EPLFIAFQQYFSSSC--YCMTT 35
FH F E SL Q L A+Q Y+SSS YCM T
Sbjct: 227 FHLPFTIE-SLSQTGSRLLSAYQNYYSSSLLEYCMLT 262
>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 172 SVLATKNDNLTEEMDLDKNFEEFDPQKEPLLR 267
S++ T +D + DLD+N E+F+ + L R
Sbjct: 337 SIIITSSDPDADNADLDRNIEKFNWDSDDLYR 368
>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 172 SVLATKNDNLTEEMDLDKNFEEFDPQKEPLLR 267
S++ T +D + DLD+N E+F+ + L R
Sbjct: 337 SIIITSSDPDADNADLDRNIEKFNWDSDDLYR 368
>U28929-4|AAA68347.3| 338|Caenorhabditis elegans Hypothetical
protein F09C12.6 protein.
Length = 338
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 347 NEASAFLYICHISGY 303
N+ + F+YIC+ISGY
Sbjct: 191 NDYATFIYICNISGY 205
>AF125461-2|AAK18994.1| 158|Caenorhabditis elegans Hypothetical
protein Y8A9A.3 protein.
Length = 158
Score = 27.1 bits (57), Expect = 8.1
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Frame = +1
Query: 193 DNLTEEMDLDKNFEEFDPQKEPLLRE------NPRRFV--IFPIQ-YPDIWQMYKKAEAS 345
+ L DLD N F+P EP++ + NPR P+Q Y W++ EA
Sbjct: 69 EELIPNEDLDLNCYLFNPNGEPVVPQPVKRAMNPRSLFNNQRPVQVYHQRWELLPNEEAE 128
Query: 346 FWTVEEVDLSKDLSDWETLKDSERHFIKHVLAFFAAS 456
W K++ W ++D +R I+ L F S
Sbjct: 129 HW--------KEM--WVQMRDEQREQIEEQLIEFRYS 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,358,861
Number of Sequences: 27780
Number of extensions: 227405
Number of successful extensions: 752
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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