Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS317C09f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 147 1e-36
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 98 6e-22
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 79 4e-16
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 67 2e-12
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 66 3e-12
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 54 1e-08
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 3.0
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 6.8
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 25 6.8
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 25 9.0
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 25 9.0
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 147 bits (356), Expect = 1e-36
Identities = 67/113 (59%), Positives = 88/113 (77%), Gaps = 1/113 (0%)
Frame = -1
Query: 521 VRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTG-SYLTVKDNQV 345
VR+QL R M+R ++ ST F K+YY+NIR+ALV+GFFMQVA G +Y+T+KDNQV
Sbjct: 597 VRKQLRRTMERQEVELISTPFDDKNYYVNIRRALVSGFFMQVAKKSANGKNYVTMKDNQV 656
Query: 344 VQLHPSTCLDHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYELGNF 186
V LHPS L P+WV+YNEFVLTTK++IR VT I+PEWL+++AP YY+L +F
Sbjct: 657 VSLHPSCGLSVTPEWVVYNEFVLTTKSFIRNVTAIRPEWLIELAPNYYDLDDF 709
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 98.3 bits (234), Expect = 6e-22
Identities = 50/116 (43%), Positives = 74/116 (63%), Gaps = 2/116 (1%)
Frame = -1
Query: 521 VRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTG-SYLTVKDNQV 345
VR QL+ + +R ++ + S D I+KA+ G+F A L+R+G SY TVK NQ
Sbjct: 933 VRDQLANLCERVEIELVTNSSESLD---PIKKAITAGYFSNAARLDRSGDSYRTVKSNQT 989
Query: 344 VQLHPSTCL-DHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYELGNFPQ 180
V +HPS+ + + KP +IY E VLTTK Y R +T+I+PEWLL+I+P Y++ N +
Sbjct: 990 VYIHPSSSVAEKKPKVIIYFELVLTTKEYCRQITEIQPEWLLEISPHYFKPENIEE 1045
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 79.0 bits (186), Expect = 4e-16
Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
Frame = -1
Query: 521 VRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLE-RTGSYLTVKDNQV 345
VR+QL R+MDR+ S + I +AL +G+F VA + G Y T+ +N
Sbjct: 1024 VRKQLIRLMDRYRHPVVSCGRKRE----LILRALCSGYFTNVAKRDSHEGCYKTIVENAP 1079
Query: 344 VQLHPSTCLDHKP-DWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYELGNFPQ 180
V +HPS L K +WVIY+E + T+K Y+ TV+ + P+WL+++AP +++ N Q
Sbjct: 1080 VYMHPSGVLFGKAAEWVIYHELIQTSKEYMHTVSTVNPKWLVEVAPTFFKFANANQ 1135
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 66.9 bits (156), Expect = 2e-12
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = -1
Query: 437 NIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQLHPSTCL-DHKPDWVIYNEFVLTTKNY 261
N+ + ++G+ A L GSY T+ NQ + +HPS+ L K + ++Y+E V TTK+Y
Sbjct: 635 NLLLSFLSGYITNTALLHPDGSYRTIIGNQTISIHPSSSLFGKKVEAIMYHELVFTTKSY 694
Query: 260 IRTVTDIKPEWLLKIAPQY 204
+R V+ I+ WL +AP Y
Sbjct: 695 VRGVSSIRSNWLNAVAPHY 713
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 66.1 bits (154), Expect = 3e-12
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Frame = -1
Query: 521 VRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVV 342
+RQQL IM + ++ S E S D+ I +R+ L + +F Q A + G Y+ ++
Sbjct: 1004 IRQQLVEIMSK---QKISLESVS-DWDI-VRRVLCSAYFHQAACAKGIGEYVHLRSGMPC 1058
Query: 341 QLHPSTCL---DHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYEL 195
LH ++ L + PD+VIY+E VLT+K Y+ VT + P WL + YY +
Sbjct: 1059 HLHVTSSLYGLGYLPDYVIYHELVLTSKEYMNIVTSVDPYWLAEFGGVYYSV 1110
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 54.0 bits (124), Expect = 1e-08
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Frame = -1
Query: 521 VRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVV 342
+R L R +++F++ T+ S D I K L++GF VAHL+ GSY T+ QV
Sbjct: 542 IRTHLVRFLNKFSIP-TAQRLPSSDCS-KILKCLLDGFVRNVAHLQNDGSYKTIGGKQVW 599
Query: 341 QLHPSTCLDHKPDWVIYNEFVLT-TKNYIRTVTDIKPEWLLK 219
S + K W++Y+ V + T+ +++ ++ I+ WL K
Sbjct: 600 LDSSSVLHEKKTPWIMYSSAVESETQIFVKNISKIESFWLDK 641
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 458 TSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQL 336
T D Y+ + AL+N Q+ + + LT+ +V+QL
Sbjct: 832 TQTDEYLRRKDALINNLQNQLESTKEVANELTITKERVLQL 872
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 189 VAQLVVLGSDLQQPFRLDISDSPNVVLGGEHELV 290
+ QL+V +L+Q F LDI DS + G HE++
Sbjct: 489 INQLIVACEELEQGFDLDILDS--LRESGIHEVI 520
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = -1
Query: 374 SYLTVKDNQVVQLHPSTCLD-----HKPDWVIYNEFVLTTKNYIRTVTDIK 237
SYL + + + Q+ PS L + W+++ FVLT ++++ + ++
Sbjct: 113 SYLVIVGDLMPQIAPSLGLSSPMFLRRQTWIVFALFVLTPLSFLKRLDSLR 163
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 422 LVNGFFMQVAHLERTGSYLTV-KDNQVVQ 339
L N F +Q+ L++ G Y T+ KD + VQ
Sbjct: 657 LYNAFKLQLTSLKQKGEYATLAKDAEAVQ 685
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 518 RQQLSRIMDRFNLKRTSTEFT-SKDYYINIRKALVNGFFMQVAHLERTGSYL 366
++ LS ++ L ST D I + + N + +++AH +RT S+L
Sbjct: 34 QETLSSLLRELQLSHFSTAVRPGSDTSIFVFVKVQNDYLIELAHNDRTSSFL 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,947
Number of Sequences: 5004
Number of extensions: 36531
Number of successful extensions: 106
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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