Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317C09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   1.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   2.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   3.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.8  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 198 LVVLGSDLQQPFRLDISDSPNVVLG 272
           LV LG  L  P R+DI    N +LG
Sbjct: 270 LVGLGFSLNGPDRIDILSQINGILG 294


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 353 NQVVQLHPSTCLDHKPDWVIYNEFVLTTKNYIRTVTDIKPEWL 225
           N+V+ +HP   +  K DW I +  +L T+  I+    + P  L
Sbjct: 237 NKVI-IHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACL 278


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 3/19 (15%)
 Frame = +3

Query: 450 FACEFCACSFQIK---SVH 497
           + CE+C+ SF +K   SVH
Sbjct: 120 YQCEYCSKSFSVKENLSVH 138


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 377 GSYLTVKDNQVVQLHPSTCLDHKPDWVIYN 288
           GS + +  N      P  CL +  D++IY+
Sbjct: 318 GSPIVLGLNNTPDRTPDQCLFYNTDFIIYS 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,763
Number of Sequences: 438
Number of extensions: 2720
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)