Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317C08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    29   0.32 
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   1.3  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   1.7  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   3.0  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    26   3.9  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    25   5.2  
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    25   9.0  

>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 132 RISDAHEAKINVNSINCKMKRSSNKTWKLLSKTLKE 239
           R+SD H A  N N I  +     N+T  +LS+ + E
Sbjct: 579 RVSDEHSASSNFNEIESQASFEQNQTLDILSENIVE 614


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 394 QLANIINIRLRLTCAVAIKCHKKSLSHWARNK 299
           Q+ NI NI + +  A  I C  + + HW   K
Sbjct: 772 QIPNIQNINMSIFEAFPIACSLQQIEHWVNEK 803


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +3

Query: 180  CKMKRSSNKTWKLLSK---TLKENNYCVNHYICM 272
            C+  R    TW  LS    TLKE  +C N+ I M
Sbjct: 946  CQQSRIIGCTWTSLSTRLGTLKEKGFCFNNLIVM 979


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +2

Query: 344  RYSTSQSQSNIDDVCKLLRDTGYDQQNAKRPAEYPVEYFSRVNIRHDFIEKVLGKL 511
            R+S S++   I+ +  +     +DQQ       + ++ F    + H+ I  VL +L
Sbjct: 1174 RFSQSENVFPIEQIIDITERYAFDQQGEAVATGWVIDTFLGAGVSHELIFIVLNQL 1229


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 298 VYSWPNERETSCGILSLQH 354
           +Y+WP +     GI+S++H
Sbjct: 292 IYNWPEQLFADAGIMSIEH 310


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +3

Query: 144 AHEAKINVNSINCKMK----RSSNKTWKLLSKTLKENNYCVNHYICMGPCFY 287
           +HE K    S+N +      RSSN +  L SK L  +   VN+Y    P F+
Sbjct: 528 SHEDKRENQSVNSESSKYSPRSSNHSPTLHSKDLHRDMATVNNYAKSPPSFH 579


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 315 IGPGINRSHNKSMAPYKYNDSHN 247
           I PG+   H K+  PY   DSH+
Sbjct: 392 IVPGVLTEHGKTKNPYPNVDSHS 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,186,497
Number of Sequences: 5004
Number of extensions: 44358
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)