Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS317C08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0795 - 19704354-19704464,19705152-19705214,19705298-197053... 56 2e-08
08_02_0236 + 14652034-14652225,14652311-14652527,14652561-146532... 29 3.0
03_02_0653 - 10200698-10200754,10200937-10201443 28 5.2
02_05_0880 + 32466538-32467083,32467333-32467644,32467731-324682... 28 5.2
06_03_0588 + 22567820-22570802,22570917-22571269 27 6.9
03_02_0968 - 12791229-12791423,12791831-12791928,12792021-12792222 27 6.9
10_06_0029 + 9822216-9823124,9825210-9825329,9826188-9826304,982... 27 9.1
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187... 27 9.1
>04_03_0795 -
19704354-19704464,19705152-19705214,19705298-19705378,
19705468-19705623,19705711-19705785,19706477-19706587,
19707206-19707304,19707453-19707546,19707779-19707838,
19709262-19709334,19711448-19711490,19711533-19711606,
19711985-19712075,19712170-19712214,19712533-19712589,
19713440-19713544,19713817-19713932,19714625-19714634,
19714810-19714920,19715502-19715594,19715664-19715690,
19715736-19715798,19716326-19716451,19716812-19716949,
19717164-19717832,19717949-19718123,19718269-19718450
Length = 1015
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/74 (39%), Positives = 45/74 (60%)
Frame = +2
Query: 179 LQDEAFIQQNMETVIKDIEGKQLLCESLYLYGAMLLLCDLFIPGPMRERLLVAFYRYSTS 358
LQ+ ++ ++ V++ QLL ES+ L+G M LL + I G +RERLLVA+ R+
Sbjct: 118 LQEGLYVHCTLDGVLESNWACQLLTESMTLFGCMALLMEHRISGLLRERLLVAYLRHERC 177
Query: 359 QSQSNIDDVCKLLR 400
S N++ +CKL R
Sbjct: 178 FSFPNVERICKLCR 191
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +3
Query: 6 SHGNAIIAEILRLKDHNPKVYLLESREIQQKYQDVILDFSYFRISDAHEAKINVN 170
+ A+IAE+L L D P S+ +++ V+ DF YF EA+I N
Sbjct: 28 ARAEALIAELLLLSDRAP------SQFADRRFHPVLFDFRYFDSPGEFEARIEGN 76
>08_02_0236 +
14652034-14652225,14652311-14652527,14652561-14653208,
14653374-14654364,14654532-14654703
Length = 739
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/75 (26%), Positives = 30/75 (40%)
Frame = +2
Query: 251 CESLYLYGAMLLLCDLFIPGPMRERLLVAFYRYSTSQSQSNIDDVCKLLRDTGYDQQNAK 430
C Y +G LL GP R L FY ++ + N + +L R T +AK
Sbjct: 631 CPEKYEHGKALLPEWALKKGPWEMRRLHTFYMEASKKGLGNSSIIGRLFRRTRMQYMDAK 690
Query: 431 RPAEYPVEYFSRVNI 475
+ E P+ + I
Sbjct: 691 KKKE-PIGFLDPTRI 704
>03_02_0653 - 10200698-10200754,10200937-10201443
Length = 187
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 284 LLCDLFIPGPMRERLLVAFYRYSTSQSQSNID-DVCKLLRDTGYDQQNAKRP 436
LLCDLF PG E L RY+ ++Q D + C+ D + Q RP
Sbjct: 38 LLCDLFYPGGESE-LARVVRRYTELEAQHRQDMERCRQAHDELLEFQATLRP 88
>02_05_0880 +
32466538-32467083,32467333-32467644,32467731-32468201,
32468481-32469246,32469332-32469774
Length = 845
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 392 LLRDTGYDQQNAKRPAEYPVEYFSRVNIRHDFIEKV 499
LL DTG +AK PVEY+ +V H +K+
Sbjct: 259 LLNDTGLGWDHAKGTVAAPVEYWKKVTKGHSEWKKL 294
>06_03_0588 + 22567820-22570802,22570917-22571269
Length = 1111
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/60 (23%), Positives = 31/60 (51%)
Frame = +3
Query: 69 LLESREIQQKYQDVILDFSYFRISDAHEAKINVNSINCKMKRSSNKTWKLLSKTLKENNY 248
+LES E+Q + + I+ S+ ++ ++ I+ N ++ K+ L++ L NN+
Sbjct: 635 ILESLELQSNFLEGIIPESFAKLQSINKLDISHNKLSGKIPEFLASFKSLINLNLSFNNF 694
>03_02_0968 - 12791229-12791423,12791831-12791928,12792021-12792222
Length = 164
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 221 IKDIEGKQLLCESLYLYGAMLLLCDLFIPGPMRERLL 331
+KD E K++LC+++ +GA LL+ GP+ LL
Sbjct: 107 VKDGEAKRVLCDAVGEHGAGLLVVGSHGYGPVLRALL 143
>10_06_0029 +
9822216-9823124,9825210-9825329,9826188-9826304,
9826387-9826476,9826706-9826756
Length = 428
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 138 SDAHEAKINVNSINCKMKRSSNKTWKLLSKTL-KENNYCVNHYI 266
+DA K V+S KM ++ W LLSK L N + H+I
Sbjct: 383 ADAQGVKKVVSSALTKMDTMASSMWSLLSKKLVVMENKTIEHFI 426
>03_02_0981 +
12917195-12917572,12917661-12917818,12918732-12918765,
12918942-12919074,12919167-12919221,12919281-12920064,
12920440-12920769,12920788-12920895,12921259-12921678,
12921775-12921847,12922291-12922376,12922873-12922992,
12923086-12923156,12923350-12923449
Length = 949
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = +3
Query: 183 KMKRSSNKTWKLLSKTLKENNYCVNHYI 266
+ KRS K W+ + ++ + C HY+
Sbjct: 15 RCKRSDGKQWRCSAPSMPDKTVCEKHYV 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,983,385
Number of Sequences: 37544
Number of extensions: 243304
Number of successful extensions: 595
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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