Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317C08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003150-1|AAB54215.1|  997|Caenorhabditis elegans Hypothetical ...    39   0.002
Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF016429-4|AAB65363.1|  881|Caenorhabditis elegans Patched relat...    29   2.0  
U80840-5|AAB37930.1|  353|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z83125-10|CAB05625.1|  459|Caenorhabditis elegans Hypothetical p...    27   6.2  
AF016428-4|ABR92600.1|  504|Caenorhabditis elegans Hypothetical ...    27   6.2  

>AF003150-1|AAB54215.1|  997|Caenorhabditis elegans Hypothetical
           protein T05E7.3 protein.
          Length = 997

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = +2

Query: 206 NMETVIKDIEGKQLLCESLYLYGAMLLLCDLFIPGPMRERLLVAFYRYS 352
           N ET +      +L    LY+ G +++  D +IP P+RER+ +A YR S
Sbjct: 110 NGETRMDVNRTSELEAYCLYISGILIIYMDTYIPAPIRERIYIAIYRKS 158



 Score = 31.1 bits (67), Expect = 0.50
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 3   ISHGNAIIAEILRLKDHNPKVYLLESREIQQKYQDVI-LDFSYFRISDAHEAKI 161
           I HG +I+AEI RL    PK +   ++    K+++++ LDF Y    D  E ++
Sbjct: 13  ILHGESILAEIFRLSSFIPKDFRDPTK--SSKFKNIVQLDFKYLSKVDQIEKEL 64


>Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical protein
            F45H11.4 protein.
          Length = 1243

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 123  SYFRISDAHEAKINVNSINCKMK---RSSNKTWKLLSKTLKENNYCVN 257
            S+  +SD   A+I+V  +N K+    R+    WK   +TLK   Y +N
Sbjct: 1105 SFDHLSDEELAQISVRQLNQKLMGQDRNVVMQWKQKRRTLKNRGYALN 1152


>Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical protein
            F45H11.4 protein.
          Length = 1243

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 123  SYFRISDAHEAKINVNSINCKMK---RSSNKTWKLLSKTLKENNYCVN 257
            S+  +SD   A+I+V  +N K+    R+    WK   +TLK   Y +N
Sbjct: 1105 SFDHLSDEELAQISVRQLNQKLMGQDRNVVMQWKQKRRTLKNRGYALN 1152


>AF016429-4|AAB65363.1|  881|Caenorhabditis elegans Patched related
           family protein 16 protein.
          Length = 881

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 194 TLHLAIDRIHINLSFMGIRYSKITEIQYHILVLLLYFST 78
           T+HL  D  ++   F G++    T +   + V++LYF T
Sbjct: 94  TMHLYNDEYYVGEHFAGVKIDPNTNVISRVKVVVLYFRT 132


>U80840-5|AAB37930.1|  353|Caenorhabditis elegans Hypothetical
           protein F08D12.10 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 164 CEFYQLQDEAFIQQNMETVIKDIEGK 241
           CEF +L+     Q NMETV+K +  K
Sbjct: 281 CEFLKLETSVRTQWNMETVLKGVAHK 306


>Z83125-10|CAB05625.1|  459|Caenorhabditis elegans Hypothetical
           protein T15D6.12 protein.
          Length = 459

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 153 AKINVNSINCKMKRSSNKT-WKLLSKTLKENNYCVNHYICMGPCFYYVTCLF 305
           +K N  S++   K  S+ T  K+  K+L+E   C + YI   PCFY     F
Sbjct: 76  SKKNFLSVDLYYKGISSPTKLKVYGKSLEET--CPSSYIFAKPCFYVAHTFF 125


>AF016428-4|ABR92600.1|  504|Caenorhabditis elegans Hypothetical
           protein T05C3.6a protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/71 (23%), Positives = 32/71 (45%)
 Frame = -1

Query: 290 IIKAWPHTNIMIHTIVVFLQCL**QFPCFVG*TLHLAIDRIHINLSFMGIRYSKITEIQY 111
           ++  WPHT   ++ I+  LQ +    PC+   +    I +  I + F+ +   +  +I Y
Sbjct: 363 MVSLWPHTYSDVYGILYSLQDISDHLPCYKWDSNDKCIKKGSIEIRFVQVPEMQYGKIPY 422

Query: 110 HILVLLLYFST 78
             +    YF T
Sbjct: 423 ARVYHNKYFVT 433


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,867,092
Number of Sequences: 27780
Number of extensions: 241175
Number of successful extensions: 701
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)