Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317C08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   0.82 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.4  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   1.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.8  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   7.7  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   7.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.7  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 132 RISDAHEAKINVNSINCKMKRSSNKTWKLLSKTLKENN 245
           ++SD+   KIN +     + R SN    +L  T+ E N
Sbjct: 439 KLSDSTMNKINNHEYKRSVSRESNSNQFILMTTVNEGN 476


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 167 EFYQLQDEAFIQQNMETVIKDIEG 238
           +FY  +D  FI+   ETVIK +EG
Sbjct: 345 DFYHPEDLPFIKDIYETVIK-LEG 367


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 167 EFYQLQDEAFIQQNMETVIKDIEG 238
           +FY  +D  FI+   ETVIK +EG
Sbjct: 51  DFYHPEDLPFIKDIYETVIK-LEG 73


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +2

Query: 386 CKLLRDTGYDQQNAKRPAEYPVEYFSRVNIRHD 484
           C+++ +   ++++      YPV  F R+  +HD
Sbjct: 573 CEMIHNAQVNKRSIHN--NYPVHTFGRLTSKHD 603


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 195 SSNKTWKLLSKTLKENNYC 251
           S+   W+ L K L++  YC
Sbjct: 456 STTYLWEFLLKLLQDREYC 474


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +3

Query: 45  KDHNPKVYLLESREIQQKY-QDVILDFSYFRISDAHE--AKINVNSINCKMKRSSNKTWK 215
           K HN K  LLE R  +++Y +    +   ++  +++    + +      + +R  +K  K
Sbjct: 254 KLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETSKERSRDRTERERSKERK 313

Query: 216 LLSKTLKENNYCVNHY 263
           ++S      NY  N+Y
Sbjct: 314 IISSLSNNYNYNNNNY 329


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 45  KDHNPKVYLLESREIQQKY 101
           K HN K  LLE R  +++Y
Sbjct: 254 KLHNEKEKLLEERTSRERY 272


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +2

Query: 380 DVCKLLRDTGYDQQNAK 430
           D+C+LL+D+ Y ++  +
Sbjct: 678 DICQLLKDSQYIREQTE 694


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,956
Number of Sequences: 438
Number of extensions: 3037
Number of successful extensions: 51
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)