Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS317C05f
(408 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 29 0.37
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma... 29 0.37
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 28 0.49
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 26 2.0
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 2.6
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 2.6
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 25 3.4
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 4.5
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po... 25 4.5
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 4.5
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 4.5
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb... 25 4.5
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 4.5
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.0
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 25 6.0
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 25 6.0
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 25 6.0
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 24 7.9
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 24 7.9
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 24 7.9
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch... 24 7.9
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 7.9
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 22 8.2
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 28.7 bits (61), Expect = 0.37
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 2 MSGDTDKAKISDNQDEDKKSSTGDGQTTEDESSQDSKGDVKTTAN 136
M + K+ N E+K+ G + E S D+K D K + N
Sbjct: 170 MKRKLETEKLEANNKEEKEEKEGKDDKDDKEDSNDTKNDKKISKN 214
>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.37
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = -3
Query: 247 VFFIFIVCLTILLLFSIT--IGFILFIFGVITAGLVILTVGCRLYVTLRVLG*LIFSCLT 74
+F IF++C+++ L+ I I + F+F +I+ +T G L + L
Sbjct: 232 LFGIFVLCVSLFLVNIIADRILYGRFVFPIISFFQFNVTSGLSSLYGLNAWHYYLSQALP 291
Query: 73 IASTGFLVFILIVTD 29
+ GFL F+L+ D
Sbjct: 292 LICGGFLPFVLLTMD 306
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 28.3 bits (60), Expect = 0.49
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 20 KAKISDNQDEDKKSSTGDGQTTEDESSQDSKGDVKTTAN 136
K+ S +E+K+SST G+ E E+ + K V+T N
Sbjct: 85 KSVSSTESEEEKESSTEIGEKQEKETHLEPKTPVQTNTN 123
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 26.2 bits (55), Expect = 2.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 35 DNQDEDKKSSTGDGQTTEDESSQDSKGDVKTTAN 136
D +ED++ S ++ EDES D K V N
Sbjct: 373 DENEEDEEDSEETSESEEDESVNDEKPQVIDQTN 406
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 25.8 bits (54), Expect = 2.6
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 29 ISDNQDEDKKSSTGDGQTTEDESSQDSKGD 118
+SDN DE++ S G ++ E D D
Sbjct: 168 VSDNTDEERTESKGQQESNSAEEYDDDDSD 197
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 2.6
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 11 DTD-KAKISDNQDEDKKSSTGDGQTTED--ESSQDSKGDVK 124
+TD KAK +D+ + + K D + TED E ++ + DVK
Sbjct: 455 ETDVKAKETDSIEANDKDEKTDSKETEDKVEETESKEADVK 495
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 3.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 2 MSGDTDKAKISDNQDEDKKSSTGDGQTTEDESSQDSKGD 118
+S D D+ +ISD +D + + +E+E S +S+ D
Sbjct: 214 VSDDEDEEEISDLEDWLGSDQSMETSESEEEESSESESD 252
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 4.5
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -3
Query: 256 LHIVFFIFI-VCLTILLLFSITIGFILFIFGVITAGLVILTVGCRLYVTLRVLG*LIFSC 80
LH +FF F+ VC+ + LFS++ +++ ++ L + R++ TL L L C
Sbjct: 153 LHFLFFFFLCVCVFLSFLFSLS--------HLLSLAILFLPLLLRVFSTLSRLPRLFCLC 204
Query: 79 L 77
L
Sbjct: 205 L 205
>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 25.0 bits (52), Expect = 4.5
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = -3
Query: 262 ITLHIVFFIFIVCLTILL-LFSITI 191
I++ VFFI +VCL ++ +F+I I
Sbjct: 425 ISILFVFFIILVCLAVIFYVFNIRI 449
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 25.0 bits (52), Expect = 4.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 14 TDKAKISDNQDEDKKSSTGDGQTTEDESSQDSK 112
TD+ + DN+D+ K S G Q E+E++ SK
Sbjct: 486 TDQKQNEDNEDKVKADSNGPTQ-NENETADASK 517
>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 4.5
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -3
Query: 253 HIVFFIFIVCLTILLLFSITIGFILFIFGVITAGLVILTVGCRLYVTL 110
H++F TI I+ GF + + + LV +T+ +VT+
Sbjct: 150 HLMFLTTNYSYTINSTLDISKGFFINVLSTMVQALVTVTIAFTKFVTI 197
>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 476
Score = 25.0 bits (52), Expect = 4.5
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 5 SGDTDKAKISDNQDEDKKSSTGDGQTTEDESSQDSKGDVKTT 130
S +D SDN D ++ + GDG +++ ++ ++G +TT
Sbjct: 219 SSMSDSRDASDN-DVEEYNEDGDGGSSDAATANSTRGSRRTT 259
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.0 bits (52), Expect = 4.5
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 218 GETHDEDEKDDVKSNDXXXXXXXXXXXXXXEDTEEQDIEDD 340
GE +E+E D+V +ND D E++ ED+
Sbjct: 77 GEDGNENEVDNVNNNDKKEDEDNVEENEEEADANEEEEEDE 117
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 24.6 bits (51), Expect = 6.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 32 SDNQDEDKKSSTGDGQTTEDESSQDSK 112
SD D D SS TTE+ ++Q K
Sbjct: 981 SDIDDNDSNSSNTSNHTTENANAQQRK 1007
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 24.6 bits (51), Expect = 6.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 29 ISDNQDEDKKSSTGDGQTTEDESSQDSKGDVK 124
I DE++ S GD ++ E+ES + D K
Sbjct: 224 IQSGNDEEEIFSWGDERSDEEESDNEQVNDEK 255
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 24.6 bits (51), Expect = 6.0
Identities = 23/64 (35%), Positives = 34/64 (53%)
Frame = -3
Query: 265 IITLHIVFFIFIVCLTILLLFSITIGFILFIFGVITAGLVILTVGCRLYVTLRVLG*LIF 86
II I+ F+ ++C+ +F +I + FG LV+L G LYV +LG LIF
Sbjct: 39 IINTIIISFMTMLCMYGSSVFMPSIPELCEKFGEPET-LVVL--GATLYVIGVMLGPLIF 95
Query: 85 SCLT 74
S L+
Sbjct: 96 SPLS 99
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 24.6 bits (51), Expect = 6.0
Identities = 8/30 (26%), Positives = 20/30 (66%)
Frame = +2
Query: 35 DNQDEDKKSSTGDGQTTEDESSQDSKGDVK 124
DN++EDK+ + + +T ++ S+ + ++K
Sbjct: 196 DNKEEDKEIHSEENETKDEIKSEKKEPEIK 225
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 24.2 bits (50), Expect = 7.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 32 SDNQDEDKKSSTGDGQTTEDESSQDS 109
++ +++D K STGD TT+ S D+
Sbjct: 422 NNKKEDDLKDSTGDLNTTQVSSRVDN 447
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 24.2 bits (50), Expect = 7.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 244 FFIFIVCLTILLLFSITIGFILFIFGVITAGLVILT 137
FF+F VC LL+ S GF +F ++ +LT
Sbjct: 1505 FFLFSVCFQSLLIPSTLQGFRNPVFRIMRIMTEVLT 1540
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 24.2 bits (50), Expect = 7.9
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +2
Query: 5 SGDTDKAKISDNQDEDKKSSTGDGQT---TEDESSQDSKGDVKTTAN 136
S + S ++D D SS+ D ++ +ED S S D ++ ++
Sbjct: 166 SSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESS 212
Score = 24.2 bits (50), Expect = 7.9
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +2
Query: 5 SGDTDKAKISDNQDEDKKSSTGDGQT---TEDESSQDSKGDVKTTAN 136
S + S ++D D SS+ D ++ +ED S S D ++ ++
Sbjct: 220 SSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESS 266
>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 257
Score = 24.2 bits (50), Expect = 7.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 244 FFIFIVCLTILLLFSITIGFILFIFGVITAGLVILTVGCRLYVTL 110
+F FI L +L+LFS + L +G T +I T+G + + +
Sbjct: 93 YFPFIWSLFVLILFSNLLR--LIPYGYATTAQLIFTLGLSISILI 135
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 24.2 bits (50), Expect = 7.9
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = +2
Query: 2 MSGDTDKAKISDNQDEDKKSSTGDGQTTEDESSQDSKGDV 121
+ ++D K N DED+ S + D + + SK ++
Sbjct: 150 VENNSDFIKFDWNSDEDEDSVSNDKSKNNESLKKSSKNEI 189
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 21.8 bits (44), Expect(2) = 8.2
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 11 DTDKAKISDNQDEDKKSSTGDGQTTEDESSQDSKGD 118
D D+ + + DE ++ +G+ E+E +D GD
Sbjct: 173 DADEEEEEEEADEMEEEFDEEGEGDEEEEEEDD-GD 207
Score = 20.6 bits (41), Expect(2) = 8.2
Identities = 11/40 (27%), Positives = 16/40 (40%)
Frame = +2
Query: 221 ETHDEDEKDDVKSNDXXXXXXXXXXXXXXEDTEEQDIEDD 340
E +ED+ D D E+ EE DIE++
Sbjct: 199 EEEEEDDGDGDGEGDGDGEGENDGKGSEEEEEEEIDIEEE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,177,498
Number of Sequences: 5004
Number of extensions: 17487
Number of successful extensions: 108
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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