Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317C05f
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   0.25 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   3.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   5.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   9.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   9.4  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 25.4 bits (53), Expect = 0.25
 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
 Frame = -3

Query: 256 LHIVFFIFIVCLTILLLFSITIGF-ILFIFGVITAGLVILTVGCRLYVTLRVLG*LIF-- 86
           L I  F+F VC   +L   + I   IL +   I  GL   ++      TL VLG +IF  
Sbjct: 12  LFIFNFVFAVCGLGILTLGVLIHLQILGVSKQIETGLAFPSI------TLIVLGSIIFVI 65

Query: 85  ------------SCLTIASTGFLVFILIV 35
                        C+TI    FL+FIL+V
Sbjct: 66  SFFGCCGAIRESHCMTITFASFLLFILLV 94


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -3

Query: 238 IFIVCLTILLLFSITIGFILFIFGVITAGLVILTVGCRLYVTL 110
           +F+V L I   F + I   +FI+     G  +  +GC+++  +
Sbjct: 85  MFVVNLAICDFFMM-IKTPIFIYNSFNTGFALGNLGCQIFAVI 126


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
 Frame = -2

Query: 164 HHRRSRHPYRWLSSLRHPSSPGMTHLQLFD-HRQY 63
           H   ++HP+      +H S     HLQ  + H  Y
Sbjct: 170 HQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMY 204


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 314 TEEQDIEDDPLLVVHPNY 367
           T E  I+ +PL+  +PN+
Sbjct: 92  TREVSIDGNPLIAPYPNW 109


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
          protein.
          Length = 402

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 88 FSCLTIASTGFLVFILI 38
          FS L++   GFL  ILI
Sbjct: 20 FSLLSVLLVGFLFLILI 36


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 139 TVGCRLYVTLRVLG*LIFSCLTIASTGFLVF 47
           TVG +L+  L VL  L  S   IAS   L F
Sbjct: 397 TVGAQLFNGLFVLNRLTLSGNAIASIDPLAF 427


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 55  EIQYWRWSN 81
           E  YW WSN
Sbjct: 836 ERPYWNWSN 844


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,245
Number of Sequences: 438
Number of extensions: 1145
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)