Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317C04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    28   0.97 
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    27   1.7  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    27   2.2  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    27   2.2  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.0  
SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar...    26   3.9  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   5.2  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   5.2  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    25   6.8  

>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 235 LYQSYHKYQKGDLVLILHFHL*PFVMQQE--SFSQKGQPKSV 116
           L+   HK+ K +  LILH H   F  +Q+  +F+  G  KS+
Sbjct: 54  LHDIEHKFSKEEPSLILHIHKFHFRFEQQDGAFTYNGPVKSI 95


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 7   VTLEAGDMLYFPRGYIHQ 60
           V LE GDMLY P  + H+
Sbjct: 378 VDLEPGDMLYLPASWFHE 395


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 482 VVSKLISTLFITLPFSIMTSVSPNTVTDFSISFRTGGRASCWKFLCI 342
           +V+ LI  LF+ L + + T    +TV D+ +S    G   CW  +C+
Sbjct: 409 LVALLILFLFMFLGYLVETG-QYDTVFDWMLSISGLGTLFCWGSICL 454


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 352 NFQQDALPPVLNDMEKSVTVFG 417
           +F+ D L PV    E SVT+FG
Sbjct: 30  SFEPDELKPVARSKENSVTLFG 51


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 139 EKMIPAALQMAINENVELRQGLPFDIYDNFGIVNSD 246
           E+ IP A +    ++ E   GLPFDI  N  I N +
Sbjct: 307 EQSIPEAEKGFYTKDGEGTAGLPFDIVSNLDIPNEN 342


>SPBC1709.16c |||aromatic ring-opening dioxygenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +1

Query: 157 ALQMAINENVELRQGLPFDIYDNFGIVNSDLTTPRRKELELIIHNLFEKIKQHLPLDDAV 336
           ALQ    E + +  GL    +++    N D      KE +L I    E  KQ+  L+  +
Sbjct: 175 ALQSLRKEYLIVSGGLNIHTFEDLSAFNEDTAADGYKEFQLDILKAIETDKQNDRLNKLL 234

Query: 337 D-QMHKNFQQ 363
             Q+H  F++
Sbjct: 235 GLQLHPYFRK 244


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 166 FVMQQESFSQKGQPKSVSDTY 104
           F+ Q ESF  K QP S  D Y
Sbjct: 511 FLSQHESFVYKQQPPSTDDLY 531


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 376 PVLNDMEKSVTVFGDTDVMIENGKVINRVEISLD 477
           P  ND+EK+   +  ++V   NG  I  +E+SLD
Sbjct: 83  PSNNDIEKTPFEYDISEVSFRNGGDIVGLELSLD 116


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 226 FGIVNSDLTTPRRKELELIIHNLFEKIKQHLPLDDAVDQM 345
           F I +SDL +    E E ++  LFE  ++  P    +D++
Sbjct: 191 FSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEI 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,233,666
Number of Sequences: 5004
Number of extensions: 46286
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)