Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS317C04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0008 + 10134687-10135019 31 0.42
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 31 0.56
01_05_0752 - 24909954-24910502,24914620-24914786,24914916-249149... 31 0.74
02_01_0266 - 1758439-1758599,1758682-1758769,1759363-1759564,175... 29 3.0
05_06_0043 + 25143513-25143866,25144010-25144191,25144284-251443... 28 4.0
09_06_0336 - 22393945-22394688 27 6.9
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 27 9.1
>01_02_0008 + 10134687-10135019
Length = 110
Score = 31.5 bits (68), Expect = 0.42
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1
Query: 428 TSVSPNTVTDFSISFRTGGRASCWKFLCI*STASSNGRCC 309
TS+ TV+ S S G R SCW+ + +TA++ RCC
Sbjct: 19 TSIRSATVSFSSSSSSAGTRPSCWR--SVVTTATARRRCC 56
>04_04_1445 -
33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 31.1 bits (67), Expect = 0.56
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 1 MEVTLEAGDMLYFPRGYIHQGVT 69
ME+ LE GD++Y PRG++H+ T
Sbjct: 515 MEILLE-GDIMYVPRGFVHEAHT 536
>01_05_0752 -
24909954-24910502,24914620-24914786,24914916-24914979,
24915472-24915597,24915673-24915943,24916032-24916287,
24916386-24916754,24916850-24916891,24917474-24917682,
24918074-24918109,24918509-24918918,24919314-24919438,
24920267-24920333,24921596-24921652
Length = 915
Score = 30.7 bits (66), Expect = 0.74
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = +1
Query: 67 TIDGEHSLHVTISMYQKHSWADLFEKMIPAALQM--AINENVELRQGLPFD---IYDNFG 231
T+ G H+L I +QK + A + K +P Q +++ + L G+ FD + FG
Sbjct: 737 TLYGPHTLSAYIQEFQKLAMAMIANKEVPTNFQPPDMLDKQIGLLPGVVFDSTPLGVKFG 796
Query: 232 IVNSDL 249
VNSD+
Sbjct: 797 DVNSDV 802
>02_01_0266 -
1758439-1758599,1758682-1758769,1759363-1759564,
1759664-1759800,1760169-1760268,1760350-1760522,
1760797-1760941,1761018-1761139,1761225-1761470,
1761962-1762182,1762278-1762338,1762409-1762487,
1762572-1762651,1763221-1763292,1763382-1763449,
1763550-1763588,1763828-1763903,1763992-1764006
Length = 694
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/67 (22%), Positives = 39/67 (58%)
Frame = +1
Query: 166 MAINENVELRQGLPFDIYDNFGIVNSDLTTPRRKELELIIHNLFEKIKQHLPLDDAVDQM 345
M +E ++L + + + + +++ LT +RK+++ ++H L E++++ LD+ +++
Sbjct: 150 MKDSERLDLLKEIGGETSCEWTFIHALLTANKRKQIDQVVHYLEERLRE---LDEEKEEL 206
Query: 346 HKNFQQD 366
K Q D
Sbjct: 207 KKYQQLD 213
>05_06_0043 +
25143513-25143866,25144010-25144191,25144284-25144374,
25144452-25144568,25144922-25144976,25145008-25145093,
25145190-25145300,25145564-25145608,25145695-25145740,
25146078-25146152,25146902-25146971,25147128-25147437,
25147778-25147851,25147996-25148151,25148416-25148539
Length = 631
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = -1
Query: 455 FITLPFSIMTSVSPNTVTDFSISFRTGGRASCWKFLCI*STASSNGRCCLIFSNRLCI 282
F L ++I+ V D + F TG R + I + +S NG+C L FS R C+
Sbjct: 375 FAILNYTIIVVFPVAGVEDAVVGFVTGKRKATELAHAIWNESSVNGKCSLGFSGR-CV 431
>09_06_0336 - 22393945-22394688
Length = 247
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 10 TLEAGDMLYFPRGYIH 57
TL+ GDM FP+G +H
Sbjct: 133 TLQTGDMFVFPKGMVH 148
>02_01_0267 -
1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/45 (26%), Positives = 28/45 (62%)
Frame = +1
Query: 232 IVNSDLTTPRRKELELIIHNLFEKIKQHLPLDDAVDQMHKNFQQD 366
+++ L +RK+++ ++H L E++++ LD+ ++M K Q D
Sbjct: 71 LIHDLLAANKRKQIDQVVHYLEERLRE---LDEEKEEMKKYQQLD 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,403,468
Number of Sequences: 37544
Number of extensions: 258140
Number of successful extensions: 597
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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