Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317C04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000198-2|AAB53055.2|  748|Caenorhabditis elegans Hypothetical ...   106   8e-24
Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z82055-1|CAB04843.1|  405|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81485-1|CAB03975.1|  403|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF000198-2|AAB53055.2|  748|Caenorhabditis elegans Hypothetical
            protein T28F2.4a protein.
          Length = 748

 Score =  106 bits (255), Expect = 8e-24
 Identities = 55/174 (31%), Positives = 104/174 (59%), Gaps = 5/174 (2%)
 Frame = +1

Query: 13   LEAGDMLYFPRGYIHQGVTIDGEHSLHVTISMYQKHSWADLFEKMIPAALQMAINENVEL 192
            +E GDM+Y PRGYIHQ  T    HSLHVT+S  ++ S+A+L EK++P A+ +  +   +L
Sbjct: 495  IEKGDMIYIPRGYIHQARTDSKVHSLHVTVSTGRQWSFANLMEKVVPEAIGVLTDTRHKL 554

Query: 193  RQGLPFDIYDNFGIVNSDLTTPRR--KELELIIHNLFEKIKQHLP---LDDAVDQMHKNF 357
            R+GLP  ++D  G+++ D +      ++ ++++      ++  +    L+ +VD + K F
Sbjct: 555  RRGLPTGLFDMGGVIDLDYSQEDHFVEKFKMVVDRHMSMLRNLVADQLLESSVDSLAKEF 614

Query: 358  QQDALPPVLNDMEKSVTVFGDTDVMIENGKVINRVEISLDTTIRLLRKNILRMV 519
             + ALPP L + EK ++V G +  ++ +    + V+ +  T +RL+R++  R++
Sbjct: 615  MKQALPPRLTEQEKKLSVLGSSTNLLGD----DLVDFTARTKVRLIRRHTQRLL 664


>Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical
           protein M01A8.2a protein.
          Length = 937

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
 Frame = +1

Query: 103 SMYQKHSWADLFEKMIPAALQMAINENVELRQGLPFDIYDNF-------GIVNSDLTTPR 261
           SM+   SW+D+ + MI +      N    +R+GLP D   +         + N D    R
Sbjct: 169 SMFSNGSWSDIADSMITS------NCTFTVRKGLPIDDDGDLMSVPMVQSVFNIDREALR 222

Query: 262 RKE-LELIIHNLFEKI-KQHLPLDDAVDQMHKNFQQDALPPVLNDMEKSVTVFGDTDVMI 435
           R+E L+  I     +I  +HLP+ +  +++     +    P+ ND+  + +    T   +
Sbjct: 223 REEQLQSSIVLGESRIGVEHLPIIEDENELETPLVETRTMPLPNDLNANFSNKNSTTTFV 282

Query: 436 --ENGKVINRVEISLDTTI 486
             E  KV  R   +LD +I
Sbjct: 283 EPETPKVEIRENGNLDNSI 301


>Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical
           protein T07C12.6 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 97  TISMYQKHSWADLFEKMIPAALQMAINENVEL 192
           T++MY  H+W + F K  P      I + V++
Sbjct: 300 TVTMYSTHAWRNEFTKYFPCCRYFGIAKKVKI 331


>Z82055-1|CAB04843.1|  405|Caenorhabditis elegans Hypothetical
           protein T26H2.1 protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +1

Query: 85  SLHVTISMYQKHSWADLFEKMIPAALQMAINENVELRQGLPFDIYDNFGIVNSDLTTPRR 264
           S H+TISM   +S+   F   I A      N  V L+ G+P  +  +F  +  D  T   
Sbjct: 78  STHITISMNFDNSFQVYFYLNIDALESTCQNSIVPLKLGIPNRVETSFDKIADDYGTAYS 137

Query: 265 K 267
           K
Sbjct: 138 K 138


>Z81485-1|CAB03975.1|  403|Caenorhabditis elegans Hypothetical
           protein C49F5.1 protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 64  VTIDGEHSLHVTISMYQKHSWADLFEKMIPAAL 162
           V +  +HS  VT+   ++   AD+ +K+IPA+L
Sbjct: 190 VVVSTQHSPDVTLEKLRETILADVIKKVIPASL 222


>Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical
           protein C05D12.2 protein.
          Length = 1052

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 181 NVELRQGLPFDIYDNFGIVNSDLTTPRRKELELIIHN 291
           N ++ + L  +++    +VNS  T+  RKE  LI+H+
Sbjct: 549 NEQIYKTLTTEMHKILELVNSSTTSEYRKEFTLIVHD 585


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,263,604
Number of Sequences: 27780
Number of extensions: 257324
Number of successful extensions: 657
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)