Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317C02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo...    32   0.045
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    27   1.3  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   2.2  
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||...    26   3.0  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   5.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.0  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    25   9.0  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   9.0  

>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 32.3 bits (70), Expect = 0.045
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +3

Query: 384 FGEFSELQREDFLPVLAASRSDNPEQLA 467
           FGE SE  RED+L  L     DN EQ A
Sbjct: 78  FGEMSEFHREDYLDFLKRVTPDNAEQFA 105


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +1

Query: 382 GLESLVNYSVKIFCRYLLHHDLITLNNWPLPW 477
           G  S   Y+V  FCR  +  D      W L W
Sbjct: 479 GAPSFAAYAVLAFCRLFITRDKFPKGRWSLGW 510


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 441 RSDNPEQLAATMANMTCQDKPVSLF 515
           +S NP + A T+  ++C+ KP  LF
Sbjct: 37  KSQNPSEEATTVNELSCEAKPKLLF 61


>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +3

Query: 345 LTSEAQLRYLLQWFGEFSELQREDFLPVLAASRSD--NPEQLAATMANMTCQDKPVS 509
           +T++     L  W  +   +       VLA S+SD  N  Q++   A   C +K +S
Sbjct: 95  VTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDLQNQRQVSTEEAAEFCSEKHIS 151


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 379 NGLESLVNYSVKIFCRYLLHHDLITLNN 462
           +G + LVN + K+FC YL+      ++N
Sbjct: 876 DGHKKLVNPNTKVFCLYLVSFSYSIISN 903


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 424 RYLLHHDLITLNNWPLPWQ 480
           +YL H  L  L N P+PW+
Sbjct: 114 KYLPHAVLKLLENMPMPWE 132


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 451 LSDRDAASTGKKSSRCSSLNSP 386
           L DRD     +++S CS++N P
Sbjct: 97  LDDRDKVIVSERNSMCSTVNYP 118


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 315 IITPRMSAQGLTSEAQLRYLLQWFGEFSE--LQREDFL 422
           + T ++   G T+   LRY+++  G+FS   L+R  FL
Sbjct: 353 LYTGQILFPGRTNNQMLRYMMECKGKFSHKMLKRSQFL 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,920,117
Number of Sequences: 5004
Number of extensions: 35357
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)