Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317C02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40954-8|AAM69083.2|  471|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC084158-7|AAK68560.1|  929|Caenorhabditis elegans Hypothetical ...    28   4.7  

>U40954-8|AAM69083.2|  471|Caenorhabditis elegans Hypothetical
           protein ZK813.5 protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -1

Query: 308 LSFLSATFKSLLFINIPHLLPTRPDAYFDFAFICSFVGG 192
           LSF+S +F S +F+N+   +PT+P   F   ++C   GG
Sbjct: 156 LSFVSISFASAVFMNV---IPTKP---FRNRYVCGIDGG 188


>AC084158-7|AAK68560.1|  929|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.16 protein.
          Length = 929

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 364 CDTFYNGLESLV--NYSVKIFCRYLLHHDLITLNNWPLPWQ 480
           CD F    E+++  N+S K++ R+L +H   T    P+ W+
Sbjct: 25  CDRFLEVSENILSWNFSSKLYRRFLSNHQSSTSFRPPISWK 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,478,646
Number of Sequences: 27780
Number of extensions: 193058
Number of successful extensions: 463
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)