Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS317B10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0738 - 10824121-10825572 31 0.74
05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724 30 0.98
07_01_0310 + 2209084-2209554 29 2.3
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980... 29 3.0
03_06_0297 - 32924162-32924605 29 3.0
01_06_0146 + 26969011-26969995,26970878-26970930 29 3.0
03_06_0187 + 32209924-32210634 28 4.0
07_03_1158 - 24424060-24424461 28 5.2
07_03_1157 - 24419157-24419948 28 5.2
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 28 5.2
07_03_0350 + 17077481-17078225,17078585-17078647,17078773-17078786 27 6.9
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 27 6.9
12_01_0229 + 1731288-1732513,1733037-1733106,1733267-1734001 27 9.1
11_01_0232 + 1794081-1795175,1796087-1796782 27 9.1
07_03_1139 + 24254662-24255306 27 9.1
06_03_0171 + 17498874-17499205,17499344-17499392 27 9.1
03_04_0069 - 17022468-17023361 27 9.1
>03_02_0738 - 10824121-10825572
Length = 483
Score = 30.7 bits (66), Expect = 0.74
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +1
Query: 4 PTPQPRSRAPPSNYFPELPELPSVPSDLVLPSV 102
P P P S +PP FP P PS P LP V
Sbjct: 79 PPPSPPSSSPPPLSFPPPPPPPSSPPPPALPVV 111
>05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724
Length = 574
Score = 30.3 bits (65), Expect = 0.98
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +1
Query: 4 PT-PQPRSRAPPSNYFPELPELPS 72
PT PQP+ +APP ++ P LP LP+
Sbjct: 251 PTLPQPQHQAPPPSHPPALPALPA 274
>07_01_0310 + 2209084-2209554
Length = 156
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 10 PQPRSRAPPSNYFPELPELPSVPSDLVLPSVP 105
P P A P+ P +P +P+VP + VLP +P
Sbjct: 88 PMPAVPAVPTATLPPMPAVPAVP-NAVLPPIP 118
>10_06_0028 -
9802362-9802475,9802919-9803090,9803167-9803208,
9803344-9804011,9804098-9804418,9804495-9804833,
9804856-9805109,9805300-9805510
Length = 706
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 4 PTPQPRSRAPPSNYFPELPELPS 72
P P P SR PPS+ P + LPS
Sbjct: 466 PRPAPTSRPPPSHPHPTVVSLPS 488
>03_06_0297 - 32924162-32924605
Length = 147
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = +1
Query: 4 PTPQPRSRAP--PSNYFPELPELPSVPSDLVLPSVPXXXXXXXXXXXXXXPGPSD 162
PTP P P PS PE+P++P P D+ P P P P D
Sbjct: 86 PTPGPEQPGPSIPSPPMPEVPDVPRNP-DVPPPKPPELDPPRPPPEVVPEPTPPD 139
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +1
Query: 7 TPQPRSRAPPSNYFPELPELPSVPSDLVLPSVP 105
TPQPR+ APP P+ P PS P L PS P
Sbjct: 96 TPQPRA-APPPAPAPDQPAPPSPPPSLP-PSPP 126
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 4 PTPQPRSRAPPSNYFPELPELPSVPSDLVLPSVP 105
PTP P + PP + P P +P+ P+ P
Sbjct: 26 PTPHPATDPPPISPQNPTPPPPPLPASAAAPTTP 59
>03_06_0187 + 32209924-32210634
Length = 236
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 1 VPT-PQPRSRAPPSNYFPELPELPSVPSDLVLPSVP 105
VPT P P A P PE+P +P P V+P VP
Sbjct: 201 VPTLPVPPLPAVPGVPLPEVPGVPLPPVPSVVPPVP 236
>07_03_1158 - 24424060-24424461
Length = 133
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +1
Query: 16 PRSRAPPSNYFPELPELPSVPSDLVLPSVP 105
P A P PELPELP VP +L P VP
Sbjct: 48 PAHPAVPEIPKPELPELPKVP-ELPHPVVP 76
>07_03_1157 - 24419157-24419948
Length = 263
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 16 PRSRAPPSNYFPELPELPSVPSDLVLPSVP 105
P+ PP PELP+ P +P V+P +P
Sbjct: 75 PKHEEPPHPVVPELPK-PELPPHPVVPELP 103
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 16 PRSRAPPSNYFPELPELPSVPSDLVLPSVP 105
P+ PP PELP+ P V+P +P
Sbjct: 89 PKPELPPHPVVPELPKHEEPPHPAVVPELP 118
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 4 PTPQPRSRAPPSNYFPELPELPSVPS 81
PTP P APP +FP LP P P+
Sbjct: 49 PTPAPPGPAPP--FFPALPVPPPPPA 72
>07_03_0350 + 17077481-17078225,17078585-17078647,17078773-17078786
Length = 273
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 16 PRSRAPPSNYFPELPELPSVPSDLVLPSVP 105
P+ P+ PELP LP +PS + P P
Sbjct: 110 PQLPTLPTIQIPELPPLPPLPSVSITPGSP 139
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = +1
Query: 4 PTPQPRS-RAPPSNYF--PELPELPSVP-SDLVLPSVP 105
P PQP++ APP Y P+ P+ P S +V PS P
Sbjct: 342 PVPQPQAPPAPPQQYQTPPQFPQYSQPPQSGMVNPSTP 379
>12_01_0229 + 1731288-1732513,1733037-1733106,1733267-1734001
Length = 676
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 4 PTPQPRSRAPPSNYFPELPELPSVPSDLVL 93
PTPQP PPS+ P P + ++P DL+L
Sbjct: 35 PTPQP---PPPSS--PPAPPISALPDDLLL 59
>11_01_0232 + 1794081-1795175,1796087-1796782
Length = 596
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 4 PTPQPRSRAPPSNYFPELPELPSVPSDLVL 93
PTPQP PPS+ P P + ++P DL+L
Sbjct: 35 PTPQP---PPPSS--PPAPPISTLPDDLLL 59
>07_03_1139 + 24254662-24255306
Length = 214
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 7 TPQPRSRAPPSNYFPELPELPSVPSDLVLPS 99
TP P R P+ P LP L PS LP+
Sbjct: 149 TPPPAHRPDPATAVPHLPPLGRDPSPSPLPT 179
>06_03_0171 + 17498874-17499205,17499344-17499392
Length = 126
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 81 GRHGGKLRQFREIVRWRRP*PRLR 10
G GGK+R+ R R RRP PR R
Sbjct: 82 GGQGGKIRRRRPFPRRRRPFPRHR 105
>03_04_0069 - 17022468-17023361
Length = 297
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 4 PTPQPRSRAPPSNYFPELPELPSVPSDLVL 93
PTPQP PPS+ P P + ++P DL+L
Sbjct: 35 PTPQP---PPPSS--PPAPPISALPDDLLL 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,905,681
Number of Sequences: 37544
Number of extensions: 172381
Number of successful extensions: 746
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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