Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS317B09f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.3
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 27 1.7
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.9
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 26 3.9
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 5.2
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p... 25 5.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 5.2
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 6.8
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 25 6.8
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 25 9.0
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 25 9.0
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe... 25 9.0
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 1.3
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = -1
Query: 359 AAAATVPSSLTSIFALCIASSNRMPCCSVNVLKSAVPLNRSPTPSFSRISLSGSDLSMEN 180
+++++ SSL+S + ASS+ S +++ S+ + SPT + S IS S S S
Sbjct: 245 SSSSSTSSSLSSSSSSSTASSS---SSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPT 301
Query: 179 LGISTMTS 156
ST++S
Sbjct: 302 STSSTISS 309
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 172 IPKFSMERSLPLREILEKLGV 234
+ K+ +E LP+R IL+KLG+
Sbjct: 88 LEKYLIEEELPVRSILKKLGI 108
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.8 bits (54), Expect = 3.9
Identities = 8/25 (32%), Positives = 19/25 (76%)
Frame = +2
Query: 191 RGRYHLEKSWKNLGSEICSMEQLTS 265
+G YHL++ + + SE+ +++QL++
Sbjct: 2542 KGNYHLKEHEREVSSELLNLQQLSA 2566
>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 288
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 287 AFCSMMLYIKQRLTLTKKVLWQQLRPPSSGSVRLDLQNRPASLPTSLSYTF 439
AF ++ + LT VL+QQL S+ + ++ +SLP L F
Sbjct: 80 AFVNVSITSPTLLTSVDPVLYQQLEASSTNDISTVFEDESSSLPIILHPKF 130
>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 315 FMYSIIEQNAVLLC-QRTEVSCSIEQISDPKF 223
F+YSI +Q + +C Q + S IE + P F
Sbjct: 109 FIYSIFKQTGIWICKQVADESSLIEMLKKPVF 140
>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 216
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +1
Query: 193 RSLPLREILEKLGVGDLFNGTADFSTLTEQHGI--LFDDAIHKAKIDVNEEGTVAAAATA 366
RS+P+ L LG+ L TA + +G+ + +++ A + ++ V A
Sbjct: 7 RSIPITARLPSLGIRSLATATASAHPPVQLYGLDGSYASSLYTAAVKESKLDNVEKALNK 66
Query: 367 IFGFRSSRP 393
+ G RP
Sbjct: 67 LSGVLQQRP 75
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 5.2
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = -1
Query: 308 IASSNRMPCCSVNVLKSAVPLNRSPTPSFSRISLSGSDLSMENLGISTMTSLPI*LSSTT 129
I++S + P SV +VP + S P S S S S +ST + + +SST
Sbjct: 452 ISTSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSSTL 511
Query: 128 AARRSGV 108
+ S +
Sbjct: 512 LSGSSAI 518
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -3
Query: 240 ISDPKFFQDFSKW*RPLHGKLRNLNDDFSAHIALFYHSSQTLGGQVSDN 94
I D F +D++ LH L+ D F ++ + S + G +SDN
Sbjct: 54 IIDEDFAEDYNLTVDILHRPLQENFDSFFPNVEAYVESGNSNGDLMSDN 102
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 296 SMMLYIKQRLTLTKKVLWQQLRPPSSGSVRLDLQNRPASLPTSLSY-TFYTNVQP 457
S+++ +Q +T T L+PPSSGS+ P T + + T TN+ P
Sbjct: 263 SLLMENQQNITGTGSFA-DYLQPPSSGSLGAFTNASPGESNTGIDFDTDNTNLNP 316
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 14 WSFRTKAVTSACTFYYRLTL 73
W F K +T A F+Y +T+
Sbjct: 450 WLFVNKRITEAINFFYTITI 469
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 238 DLFNGTADFSTLTEQHGILFDD 303
+L NG +FS+ +E++ +L DD
Sbjct: 255 ELNNGKFEFSSRSEENSVLLDD 276
>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 364 AIFGFRSSRPAEPTRFVANFP 426
A+ F + AE TRF NFP
Sbjct: 51 ALLNFENDSEAEQTRFEQNFP 71
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,861
Number of Sequences: 5004
Number of extensions: 46045
Number of successful extensions: 164
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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