Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317B07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    28   0.73 
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    27   1.7  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   1.7  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   5.2  
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    25   9.0  

>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
            polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 121  WDHECGITALHPLVRDAFVRFH 56
            W H C +  ++ L+R+AFV  H
Sbjct: 1030 WTHACDVDQMNSLLREAFVLLH 1051


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 301 HFQQLRQISLGNEFKYKMEMEIKDENLRNSVPFVRQ 408
           H  QLR+  L N F+ K+E  I   + +  +PF+ Q
Sbjct: 54  HGPQLREYQLKNAFRPKLEGVISSLDNKLPIPFMNQ 89


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 173 LPSQLHVDPRVLWCPLTTIRYRNTYPQRVAAKTNRILSRKLVG 301
           LP+++     V   PL    Y N Y Q V A T+R  S  + G
Sbjct: 220 LPTRMAATELVGHIPLRAANYANEYSQDVPASTHRAASELVHG 262


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = +3

Query: 132 GAFETNALSVNNQHFPRNFMWI 197
           G ++ +++S++N  FP +FM++
Sbjct: 17  GVYKISSISLSNSFFPHSFMFV 38


>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 295 RRHFQQLRQISLGNEFK-YKMEMEIKDENLRNSVP 396
           R H Q    +SLG EF  Y  ++    E + N++P
Sbjct: 203 RTHMQDATPLSLGQEFSGYVTQVGYGIERINNALP 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,676
Number of Sequences: 5004
Number of extensions: 38512
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)