Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317B07f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK096229-1|BAC04732.1|  454|Homo sapiens protein ( Homo sapiens ...    25   5.6  
AY647157-1|AAT66509.1| 2881|Homo sapiens KISH2 protein.                29   7.5  

>AK096229-1|BAC04732.1|  454|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38910 fis, clone NT2NE2006813, weakly similar to
           CELL SURFACE GLYCOPROTEIN 1 PRECURSOR. ).
          Length = 454

 Score = 25.4 bits (53), Expect(2) = 5.6
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +2

Query: 167 PALPSQLHVD---PRVLWCPLTTI 229
           P+LPS +      P  LWCPLTT+
Sbjct: 397 PSLPSGVPSPSGVPITLWCPLTTL 420



 Score = 23.0 bits (47), Expect(2) = 5.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 206 LWCPLTTIR 232
           LWCPL T+R
Sbjct: 434 LWCPLNTLR 442


>AY647157-1|AAT66509.1| 2881|Homo sapiens KISH2 protein.
          Length = 2881

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 355  EMEIKDENLRNSVPFVRQXSTDSVKTKTEYXNEDGTP 465
            EM++K ENL+       + S  SV+ +T   +E G+P
Sbjct: 2044 EMKVKSENLKEEPQSSEEESMSSVEARTLIKSEPGSP 2080


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,456,104
Number of Sequences: 237096
Number of extensions: 1421657
Number of successful extensions: 3097
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3097
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)