Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317B07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81050-10|CAB02860.1|  329|Caenorhabditis elegans Hypothetical p...    28   3.5  
U28943-6|AAA68360.1|  324|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81508-2|CAB04143.1|  323|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>Z81050-10|CAB02860.1|  329|Caenorhabditis elegans Hypothetical
           protein C50B6.12 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
 Frame = +2

Query: 206 LWC--PLTTIRYRNTYPQRVAAKTNRILSRKLVGTFNNYVRSV*ETNSNTKWKWKSRTRT 379
           L+C  PL  ++  +   + V  + +R+ SR +       +    + N+N +WK  S    
Sbjct: 143 LFCVTPLIMLQPDDYADEYVKDEFHRVYSRNIT-EIARLILVAYDENNNFRWKNLSYCFI 201

Query: 380 CGILFHSL-GX*AXTALKLRRNTITRMEHRT--NLQLRNCFYGRXFLQ 514
             I+ +SL       ALK+R N + ++EH +    +L N F+    +Q
Sbjct: 202 GAIILNSLYSIIIYCALKMRHNLLKQLEHVSPEYRKLENQFFKTIIIQ 249


>U28943-6|AAA68360.1|  324|Caenorhabditis elegans Hypothetical
           protein E04F6.2 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/81 (23%), Positives = 33/81 (40%)
 Frame = +2

Query: 83  KGMKSGYTALVVPNTPGCLRNQRSQRQQPALPSQLHVDPRVLWCPLTTIRYRNTYPQRVA 262
           +G+++G  +  +     CL+          + +QL    R L  PL T+R   +   RV 
Sbjct: 222 RGIRAGLYSFDIEKKKFCLKTLSRITAMQGIGAQLVPFYRQLLPPLRTVRQSRSRSDRVH 281

Query: 263 AKTNRILSRKLVGTFNNYVRS 325
               R +   +  T N+  RS
Sbjct: 282 YDKGRQIEEIITSTLNDLERS 302


>Z81508-2|CAB04143.1|  323|Caenorhabditis elegans Hypothetical
           protein F20E11.4 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 169 WLLTLRALVSKAPGRIWDHECGITALHPLVRDAFVRFH 56
           W  TL  +V    G IW   CGI      ++ AF+R +
Sbjct: 121 WKQTLLYIVPVCCGVIWGMICGIALSESSLKSAFLRMY 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,339,419
Number of Sequences: 27780
Number of extensions: 217879
Number of successful extensions: 551
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)