Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317B07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   3.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   4.4  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/42 (19%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 322 ISLGNEFK--YKMEMEIKDENLRNSVPFVRQXSTDSVKTKTE 441
           +++G +F+  ++  + + DEN+    P+V+  + + ++  T+
Sbjct: 210 MAIGRKFEEAFQKALRMVDENINGFDPYVKTPNDEELEKPTD 251


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 242 CSGIGS*LVGTRVPWDPHEV 183
           CSG+G   +  R+P D  EV
Sbjct: 780 CSGLGVEEIPRRIPMDATEV 799


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/62 (20%), Positives = 26/62 (41%)
 Frame = +1

Query: 307 QQLRQISLGNEFKYKMEMEIKDENLRNSVPFVRQXSTDSVKTKTEYXNEDGTPYKSTTQK 486
           ++  Q S  NE +Y+   E   E  R+     R   +  + + +     +   YK+  +K
Sbjct: 276 REREQKSYKNEREYRKYRETSKERFRDRRERERSKESKIISSLSNKTIHNNNNYKNYNKK 335

Query: 487 LF 492
           L+
Sbjct: 336 LY 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,460
Number of Sequences: 438
Number of extensions: 2761
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)