Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317B06f
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    25   3.8  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   5.0  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   5.0  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   6.6  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   6.6  

>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 269 TQITYDKTGEPIKLVISNRSSIRKMK 192
           T  TYD +GE +K+ I+ +  ++K K
Sbjct: 17  TMYTYDSSGETLKIAIAWKIILKKPK 42


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -1

Query: 356 NESDRNXIKRNVYIQGLR*FSKISAASKLTQITYDKTGEP 237
           ++ D+  + RN      R  S+    + L ++ Y+K G+P
Sbjct: 56  DQEDKGSLDRNQVYACFRLISQAQRGATLQELDYNKAGDP 95


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -2

Query: 187 LFCNFFISHCVPTIDEHCNSEYHKCFLCVIQNVLQLPTYIH 65
           +F +  I  C   +   C   +   F C++Q +L +PT I+
Sbjct: 717 IFSSLLILACYAFVSLICMDPFF-IFTCIVQYILLMPTRIY 756


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 89  HVLYNTQKTLVIFTIAVLVYCWNTMGNKKVTK 184
           HVLY+   T VI  + VL++ +  +   K  K
Sbjct: 683 HVLYSLANTYVICILGVLIWQFFLLSRSKFAK 714


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 184 FCNFFISHCVPTIDEHCNSEYHKCFLCVIQNVL 86
           +C    S     +D H N  + +  +CVIQ+ +
Sbjct: 145 YCYLIASKIDDLLDSHPNEVFKETLICVIQSAV 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,650,963
Number of Sequences: 5004
Number of extensions: 31620
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)