Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317B06f
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0122 + 17465804-17465893,17466028-17466147,17466287-174663...    27   6.5  
06_01_0939 + 7232682-7232933,7233048-7233228,7233354-7233463,723...    27   8.6  

>03_04_0122 +
           17465804-17465893,17466028-17466147,17466287-17466317,
           17466978-17467153,17468051-17468142,17468259-17468340,
           17468498-17468566,17468655-17468759,17471246-17471342,
           17471438-17471676,17472191-17472949,17473079-17473297
          Length = 692

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +3

Query: 297 ELTQSLDVYVSFDXISVTLIN*LERLNLSKKKYVDLFRQKXENLL 431
           ELT   DVY SF  I + L+  +  LNLSKK   +L       L+
Sbjct: 504 ELTTLSDVY-SFGVIILRLLTGMAPLNLSKKVAAELESDNLHRLI 547


>06_01_0939 +
           7232682-7232933,7233048-7233228,7233354-7233463,
           7233833-7233911,7233979-7234046,7234129-7234195,
           7234704-7234834
          Length = 295

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 313 KDCVNSQKYPRHLN*HKLPTIK 248
           K+C+  +KYPRH    K+ ++K
Sbjct: 269 KECITPKKYPRHPGTPKMQSLK 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,217,694
Number of Sequences: 37544
Number of extensions: 160852
Number of successful extensions: 327
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)