Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS317B03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 191 5e-50
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 108 4e-25
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 104 7e-24
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 104 7e-24
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 101 7e-23
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 99 5e-22
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 84 1e-17
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 30 0.18
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 29 0.42
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 2.2
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 26 3.9
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 3.9
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.0
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 191 bits (466), Expect = 5e-50
Identities = 88/149 (59%), Positives = 114/149 (76%)
Frame = +2
Query: 71 GFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPASVT 250
GFDR IT+FSPEGRLYQVEYA KA N G+TSV + G + A V +Q+KVPD+L+D ++V
Sbjct: 6 GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVK 65
Query: 251 HLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQ 430
H+F +T IGCVMTG IAD+R+QV RAR EAA ++YK G +P +L +R+A+I+QV TQ
Sbjct: 66 HVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQ 125
Query: 431 NAEMRPLGCSMMLIAYDDEAGPCVYKTDP 517
A MRPLG +M L+A DDE GP ++K DP
Sbjct: 126 RAAMRPLGVAMTLVAVDDEIGPSLFKLDP 154
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 108 bits (260), Expect = 4e-25
Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Frame = +2
Query: 65 SAGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLD-PA 241
S +D TIFSPEGRLYQVEYAL+AIN G+ ++ + D V+AA++KV +LL+
Sbjct: 2 SRSYDSRTTIFSPEGRLYQVEYALEAINHAGV-ALGIVAKDGIVLAAEKKVTSKLLEQEE 60
Query: 242 SVTHLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQV 421
S L+ + D + C + G+ AD+ + AR + + E+P L RR+ D+ Q
Sbjct: 61 SAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQG 120
Query: 422 YTQNAEMRPLGCSMMLIAYDDEAGPCVYKTDP 517
YTQ +RP G S + +D G +++++P
Sbjct: 121 YTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNP 152
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 104 bits (250), Expect = 7e-24
Identities = 61/146 (41%), Positives = 86/146 (58%), Gaps = 2/146 (1%)
Frame = +2
Query: 86 ITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPASVTHLFAL 265
+T FSP G+L Q+EYAL A+N G+TSV ++ TD V+A ++K L AS+ + A+
Sbjct: 9 LTTFSPNGKLVQIEYALNAVN-AGVTSVGIKATDGVVLATEKKPTSELAIGASLEKVCAI 67
Query: 266 TDRIGCVMTGMIADSRSQVQRARYEAANWQYK--YGSEIPVHILCRRIADISQVYTQNAE 439
T IG V +GM D R V ++R + A YK Y P IL + IA + Q TQ+
Sbjct: 68 TPDIGMVYSGMGPDFRVLVDKSR-KVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGG 126
Query: 440 MRPLGCSMMLIAYDDEAGPCVYKTDP 517
+RP G S +L+A DE GP +Y+ DP
Sbjct: 127 VRPFGVS-LLVAGMDEKGPSLYQVDP 151
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 104 bits (250), Expect = 7e-24
Identities = 50/151 (33%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Frame = +2
Query: 68 AGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPASV 247
+G+DR +++FSP+GRL QVEY +A+ +G T++ALRG + V+ +RK +L + ++
Sbjct: 2 SGYDRALSVFSPDGRLLQVEYGQEAVRRG-TTAIALRGNECIVIGVERKNVPKLQNVSNF 60
Query: 248 THLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYT 427
+ + + + G+ AD+R + +AR EA N + + + L R +A + Q YT
Sbjct: 61 QKIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYT 120
Query: 428 QNAEMRPLGCSMMLIAYD-DEAGPCVYKTDP 517
Q+ +RP G S ++ +D + P VY+T+P
Sbjct: 121 QSGGVRPFGVSTLIAGFDVGDNTPRVYQTEP 151
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 101 bits (242), Expect = 7e-23
Identities = 52/149 (34%), Positives = 83/149 (55%)
Frame = +2
Query: 71 GFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPASVT 250
G+D + FSP+GRL+Q EYA KA+ T + ++ D ++A ++ V +LL P
Sbjct: 7 GYDLGL-FFSPDGRLFQAEYAYKAVENAS-TCIGIKCEDGVILALEKVVTSKLLKPRVNN 64
Query: 251 HLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQ 430
+ ++ IG TG I D + V+RAR EA +W+ YGS IP ++ R+ + Q++T
Sbjct: 65 RIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTC 124
Query: 431 NAEMRPLGCSMMLIAYDDEAGPCVYKTDP 517
+ +RP G + YD E GP +Y +P
Sbjct: 125 YSSVRPFGVMSFVATYDSE-GPHLYMVEP 152
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 98.7 bits (235), Expect = 5e-22
Identities = 51/154 (33%), Positives = 90/154 (58%), Gaps = 6/154 (3%)
Frame = +2
Query: 74 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPASVTH 253
+DR + FSPEGRL+QVEYA++AI G T++ ++ DA V+ ++++ L++ SV
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGVKTKDAVVLGVEKRLTSPLMESHSVEK 66
Query: 254 LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 433
LF + IGC ++G+ AD+R+ ++ AR + N ++ Y + + I D++ + +
Sbjct: 67 LFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEG 126
Query: 434 AE------MRPLGCSMMLIAYDDEAGPCVYKTDP 517
+ RP G + +LIA DE GP +Y ++P
Sbjct: 127 EDGEERIMSRPFGVA-LLIAGIDEHGPQLYHSEP 159
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 83.8 bits (198), Expect = 1e-17
Identities = 50/148 (33%), Positives = 78/148 (52%)
Frame = +2
Query: 74 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPASVTH 253
+D T +SP+GRL+QVEYAL+AI QG T + T A +VA +R + +
Sbjct: 6 YDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEEL---SSYQKK 62
Query: 254 LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 433
L + D IG + G+ D+R + EA + + + IPV L ++A+ +Q+ TQ
Sbjct: 63 LIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQE 122
Query: 434 AEMRPLGCSMMLIAYDDEAGPCVYKTDP 517
RP G ++I Y DE+GP + + P
Sbjct: 123 YGRRPYGVGFLVIGY-DESGPHLLEFQP 149
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 30.3 bits (65), Expect = 0.18
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 313 VSSTTSSL*GCQLAVQVW--VRDTCAYLMQTHS*YLSSLHPKCRDETSGL 456
++S ++ + G QLA ++W +RDTC++L + Y+ S+ +D L
Sbjct: 520 IASNSAKIQG-QLATEIWAVLRDTCSFLQGSSGPYVGSVSTIAKDALESL 568
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 29.1 bits (62), Expect = 0.42
Identities = 15/62 (24%), Positives = 25/62 (40%)
Frame = +2
Query: 293 GMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAEMRPLGCSMMLI 472
GM +R+ Q +E +W Y + V LCR + ++ N + + LI
Sbjct: 606 GMCPYTRAVSQHVEWENDSWMYVLNVSLQVAKLCRHVGNVFMELNTNKLANAINYLISLI 665
Query: 473 AY 478
Y
Sbjct: 666 LY 667
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.6 bits (56), Expect = 2.2
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = +2
Query: 239 ASVTHLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADIS- 415
A++ +L+ +I CV AD Q QR + + + G P HI I + S
Sbjct: 508 ANLLNLYPDLQKIPCVFAATKADLDRQQQRYPVQPDEFTKQLGLPSPTHISTAAIWNTSK 567
Query: 416 QVYTQNAEMRPLGCSMMLIAYDDEAGPCVYK 508
+ + Q AE S ++ ++++ Y+
Sbjct: 568 EFFIQLAESAQYPASSIIRIPEEDSNKTNYQ 598
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 347 WQPHSELVVLETGYQQSSR 291
WQP S + L TGY ++R
Sbjct: 205 WQPDSSQIFLTTGYDSTAR 223
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 3.9
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -3
Query: 246 TEAGSSSLSGTLR*AATTAASVPRNATDVNPPWFIAFNAYST*YSLPS 103
T + SSS S AA +S ATD+ PP+ A ++ YS PS
Sbjct: 295 TASSSSSFSSKREEAAAEPSS--STATDIPPPYSTPSVAGASDYSTPS 340
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 9.0
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
Frame = +2
Query: 53 ARESSAGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLL 232
ARE+ + +R ++ + R + E A A+ + L L +A V A K+ L
Sbjct: 161 AREAQSSIERSASLREKQAR-EEAERAATALREAELKH-RLAQANADVDVANSKLDIALK 218
Query: 233 DPASVTHLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSE-IPVHILCRRIAD 409
+ A+ A + +I +R++++RAR+EAA Y E + L + +
Sbjct: 219 NEAAWK---AERESSLAHQKAVIDSARAELERARHEAAVADATYKKEHYEYNALVAELEE 275
Query: 410 ISQVYTQNAEMRP 448
+ Q A RP
Sbjct: 276 RNDNTLQAASKRP 288
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,876
Number of Sequences: 5004
Number of extensions: 40295
Number of successful extensions: 110
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -