Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317B02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    31   0.10 
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    31   0.14 
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    29   0.42 
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   1.7  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   3.0  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    25   6.8  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    25   9.0  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   9.0  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 364 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSADSTRE 471
           +++ YN+   M T++C+C+S  +  YGGN A    E
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +1

Query: 49  SIIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNFRLIMAGNYVKIIYRNYNL 228
           +II   V+N I+D+  +  ++C ++W G   + +R ++  N    ++    K IY +   
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYS-NLYKKLSHRDAKSIYHHVRR 305

Query: 229 A 231
           A
Sbjct: 306 A 306


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 364 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSA 456
           HN  +N + + S T+ +  SR+ V+  GNS+
Sbjct: 617 HNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
 Frame = -3

Query: 165 WEVLSNNFLS--VADPQL---VAVLHGVPSLVNDQVVNYILD 55
           W+VL +++L+  ++ P     V  LHGV + VN  V +YI D
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYIKD 229


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 52  IIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVR 153
           +++++  NL I    N +EY   LW  NG  I +
Sbjct: 447 VLKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 135 VADPQLVAVLHGVPSLVNDQVVNYILDDG 49
           V D   V + H +PS+V D   +YI  +G
Sbjct: 239 VYDSPWVDLTHSLPSVVADDAADYIPSEG 267


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 13  RQSLEYESQGKGSIIQNVVNNLIIDKRRN 99
           ++S++ ES  K S  +NV+    +D +RN
Sbjct: 62  KESIKDESSAKSSETENVLEFATLDSKRN 90


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -3

Query: 231 SEVVVSVNDLDIVSGHDE 178
           SE+VVSVN LD++S  ++
Sbjct: 316 SEIVVSVNKLDLMSWSED 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,109
Number of Sequences: 5004
Number of extensions: 39442
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)