Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS317A12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.026
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 31 0.10
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 29 0.32
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 28 0.97
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 27 1.7
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 27 1.7
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 3.0
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 26 3.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 3.9
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 5.2
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.2
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 25 6.8
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 25 6.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 25 6.8
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 25 6.8
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 6.8
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe... 25 9.0
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 9.0
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 9.0
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 25 9.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.1 bits (72), Expect = 0.026
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 28 YDTESANVPSDAEKSPVPPLPPRQSHKPLERMHALSPPQVP 150
Y ESA P+ P+PP P S +P ER+ +LS P P
Sbjct: 216 YLNESAGTPTSTSAPPIPPSIP--SSRPPERVPSLSAPAPP 254
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 31.1 bits (67), Expect = 0.10
Identities = 26/114 (22%), Positives = 46/114 (40%)
Frame = +1
Query: 19 KFVYDTESANVPSDAEKSPVPPLPPRQSHKPLERMHALSPPQVPRHRKPKRLTKPEDAFT 198
KF + E + + S + P P R + LE + PP +PR RKP R P A T
Sbjct: 173 KFDGEEEDDDDEKYSAPSKIYPSPRRSTAATLESAYEERPPSLPR-RKPSR---PGTAIT 228
Query: 199 FELIDTDEQFFTDNNIANSATMQADINDFKPGEFYSANQTAMSSTTSFWRGGQN 360
++D + + + + S ++ SS+++ + GQ+
Sbjct: 229 LPPYESDPHMLNEKDFERLRLESSSSPMMRRSSLNSNRRSVESSSSAAFVEGQS 282
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 29.5 bits (63), Expect = 0.32
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Frame = +1
Query: 52 PSDAEKSPVPPLPPRQSHKPLE-RMHALSPPQVPRHRKPKRLTKPEDAFTFELIDTDEQ- 225
P+ K P+PP R KPL R +L PP + P T +A + I+ E
Sbjct: 42 PAPVSKKPLPPPTRRLPRKPLPFRSTSLQPPS---SQPPAPPTHQREASPVKNIEHSESF 98
Query: 226 ---FFTDNNIANSATMQADINDFKPGEFYSANQT 318
F T NN D NDF G Y++ T
Sbjct: 99 PSVFGTSNNHQIVPLTLKDGNDF--GALYASLNT 130
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 27.9 bits (59), Expect = 0.97
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +1
Query: 52 PSDAEK-SPVPPLPPRQSHKPLERMHALSPPQVPRH---RKPKRLTKPED 189
PS ++ SP P + P +P+E ++S P+V H K + T P D
Sbjct: 223 PSSIQRLSPQPYVRPTSDERPIETDSSVSAPKVANHDEELKQGKSTSPSD 272
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Frame = +1
Query: 58 DAEKSPVPPLPPRQSHK-PLERMHAL--SPPQVPRHRKPKRLTKPEDAFTFELIDTDEQF 228
D EK P+P + P HAL +PP R P R T F +L+ +
Sbjct: 25 DLEKGPLPEYDSEEEGALPPYSDHALVNNPPNTHRENNPSRSTDNSSPFLIKLLISFTPI 84
Query: 229 FTDNNIA 249
+ N +A
Sbjct: 85 YVLNVLA 91
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 325 SSTTSFWRGGQNVAPLATPETDGSLCESTVSSMKLAKM--NEEKKLKQTKEIPEES 486
SS+ + + G + A DG + T S L NEEK++K+T +P+E+
Sbjct: 4 SSSHNSFSGSKTNAAEGQNSIDGLSLKKTTSPFILTAYPSNEEKEVKETDIVPDEN 59
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 391 GSLCESTVSSMKLAKMNEEKKLKQTK 468
G L EST+ ++ LAK E++K+K K
Sbjct: 578 GRLLESTIQNILLAKGTEKQKVKLIK 603
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = -3
Query: 303 IKFSRLKVINIGLHGRRISNIVICKKLLVRIDQFK 199
IKF +LKVIN+ L+ I++ + K +L++++ K
Sbjct: 238 IKF-KLKVINLFLYRDGINSDTLSKSILIKVEADK 271
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/51 (29%), Positives = 18/51 (35%)
Frame = +1
Query: 34 TESANVPSDAEKSPVPPLPPRQSHKPLERMHALSPPQVPRHRKPKRLTKPE 186
T S + A SP PP H P + P Q P H P P+
Sbjct: 913 TASMTASAPAIASPPPPKVGETYHPPTASGTRVPPVQQPSHPNPYTPVAPQ 963
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 358 NVAPLATPETDGSLCESTVSSMKLAKMNEEKKLKQTKEIPEES 486
N++PL P + E +S+ ++ EE + +++KE+PE+S
Sbjct: 323 NLSPLPPPASGPYSQEEEETSLFKSQRKEENE-EESKELPEDS 364
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 217 DEQFFTDNNIANSATMQADINDFKPGE---FYSANQTAMSST 333
+ Q+ T NN N++ + ND +P + F+SA+ SST
Sbjct: 241 NSQYSTLNNFQNNSNQSPNSNDLQPLQAEAFHSAHNGYSSST 282
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 88 PPRQSHKPLERMHALSPPQVPRHRKPKR-LTKPEDAFTFELIDTDEQFFTDNNIANSATM 264
PPR H + + A SP +VP +R +++ + + E D + T NN+ + T
Sbjct: 356 PPRYPHSQMVMLPARSPVEVPAPTFDRRNVSRNSNNNSPEGYDNNRTNPTVNNLPSYPTN 415
Query: 265 QADINDFKP 291
A KP
Sbjct: 416 LARPKAIKP 424
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 521 FINNTLFILTPGDSSGISFVCLSFFSSFILANFIEET 411
FINN + G G + C++ FSSF++ +ET
Sbjct: 424 FINNAI-----GFKLGYIYACINLFSSFMIFFLAKET 455
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 40 SANVPSDAEKSPVPPLPPRQSHKPLERMHALSPPQVPR 153
S+ +PS S PP+P P+ + +PP VP+
Sbjct: 1070 SSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPP-VPK 1106
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 1 NPCKIMKFVYDTESANVPSDAEKSPVPPLPPRQSHKP 111
N ++ K Y+ E V ++KSP P LPP + ++P
Sbjct: 447 NAPELNKNDYEGEEITV---SQKSPSPSLPPNELNEP 480
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +1
Query: 73 PVP-PLPPRQ-SHKPLERMHALSPPQVPRHRKPKRLTKP 183
P+P P PP+ + + +++ A+ Q+P H P++ KP
Sbjct: 271 PIPSPRPPQPVAVEAIQQSRAVISQQLPLHVSPRKPPKP 309
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +1
Query: 4 PCKIMKFVYDTESANVPSDAEKSPVPPLPPRQSHKPLERMHALSPPQVP 150
P + F+ T SA +P P PLPP + ++ PP VP
Sbjct: 479 PSQNAPFIPGT-SAPLPPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVP 526
>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 537
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 167 LGFLCLGTWGGDNACILSNGLCD 99
+GFL L T GG ILSN + D
Sbjct: 349 IGFLILFTIGGLTGVILSNSVLD 371
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 79 PPLPPRQSHKPLERMHALSPPQVPRH 156
PP PP Q H P R PP P H
Sbjct: 161 PPFPPTQHHHPHTR-----PPHHPPH 181
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +1
Query: 163 PKRLTKPEDAFTFE-LIDTDEQFFTDNNIANSATMQADINDFKPGEFYSANQTAMSSTTS 339
PK+ +++ T E L TD++ DN+ +++ N K E YSA Q + S
Sbjct: 71 PKKTHNEDESHTNESLPSTDKKKKKDNDDFKQ-NLKSSSN--KTEEKYSATQASKSKNDE 127
Query: 340 FWRGGQ 357
F GG+
Sbjct: 128 FELGGE 133
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 61 AEKSPVPPLPPRQSHKPLERMHALSPPQVPRH 156
A+ S PP QSH+PL M A+ P + P H
Sbjct: 123 ADFSFSPPASKIQSHEPLNDMAAVHPLR-PSH 153
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.127 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,106,079
Number of Sequences: 5004
Number of extensions: 41973
Number of successful extensions: 158
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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