Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317A04f
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    28   0.73 
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    25   5.2  
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    25   6.8  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   6.8  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   6.8  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   6.8  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    24   9.0  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    24   9.0  

>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.9 bits (59), Expect = 0.73
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 250 EEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAAMTAKDV 417
           EE  ED   G    + CT + N    + +  D +E   +   GP E++  M+  DV
Sbjct: 220 EETNEDDLLGQS-PTACTTDANIDNSIPENSDKIEEVSIESSGPSEVEDEMSEYDV 274


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 70  YKMTSSENFDEFMKTIGVGLITR 138
           +K++S++  DEF++    G+ITR
Sbjct: 140 FKLSSTKALDEFLEAKEAGIITR 162


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 274 DGAKVKSVCTFEGNTLKQVQKAPDGLEVTY 363
           D  +++++C+F+   LK   + P+   VTY
Sbjct: 313 DTERLENLCSFQSTILKHALQFPNCRHVTY 342


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 12   NLSLKSIKLIYKNGIRRQEIQDDF 83
            NL L   +++++NGI     QDDF
Sbjct: 1815 NLQLGGTQVMHRNGISHLTSQDDF 1838


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 212 EEVTKLYSSPSLRSSTVGVTALAALRVIRPTPM 114
           +E T +YS+ SL  +  G  ALA L  ++ TP+
Sbjct: 7   KESTIVYSALSLAQAGRGPEALALLEPLKSTPI 39


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 194 YSSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFSEEVILY 69
           +  P +      +T LAA    R    V  N +KFS + +LY
Sbjct: 240 HEDPIIEPDNKFLTELAAYFYFRQQGWVVKNGTKFSVDFLLY 281


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 324  LEGVAFECAYGFHLSTVSAVLFELF 250
            L+GV     Y FH S  +  +F LF
Sbjct: 1449 LDGVEMNYLYAFHFSISNRFVFSLF 1473


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 405 CHRSFHLLRAEFPDVSDFKTVG--GLLDLLEGVAFECAYGFHLSTVSAVLF 259
           C R+  +   +   +   K +G   +LDL++ V +   +G H   VS+ LF
Sbjct: 268 CSRTCRITTIQRDGLESVKQLGTQNVLDLIKLVEWNHNFGIHFMRVSSDLF 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,663,548
Number of Sequences: 5004
Number of extensions: 31083
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)