Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317A04f
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0436 - 3166764-3166949,3167115-3167258,3167343-3167469,316...    29   1.3  
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    29   1.7  
10_08_0308 + 16660751-16661450,16661656-16661819,16662615-166628...    27   6.7  
09_03_0081 + 12163213-12164088                                         27   6.7  
09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242           27   6.7  
03_02_0254 + 6862762-6863663,6863994-6864241,6864323-6864465,686...    27   6.7  
07_03_1455 - 26659480-26659758,26659907-26660149                       27   8.8  
04_04_0657 + 27000894-27001094,27001188-27001544,27002387-27002581     27   8.8  
04_04_0456 - 25355409-25355751,25356047-25356205,25356317-253565...    27   8.8  

>02_01_0436 -
           3166764-3166949,3167115-3167258,3167343-3167469,
           3167746-3167825,3167933-3168184,3168271-3168399,
           3169039-3169088,3169221-3169323,3169429-3169548,
           3169725-3169786,3169873-3169915,3169995-3170183,
           3170299-3170367,3170460-3170539,3170648-3170723
          Length = 569

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 438 LVDSGASHVLSCHRSFHLLRAEFPDVSDFKTVGG 337
           L+D+         R +HL   +FPDV  FK V G
Sbjct: 498 LIDNLGDEFAKVQREYHLPAGDFPDVEHFKEVLG 531


>02_05_0484 -
           29401195-29401404,29401572-29401755,29401866-29403973,
           29404320-29404403,29404507-29404777,29404864-29405117,
           29405513-29405722,29406357-29406503
          Length = 1155

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 20/76 (26%), Positives = 37/76 (48%)
 Frame = +1

Query: 40  SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTF 219
           S+K   V +K K+   +N         + L   +    +  T +L+K+ DEY + ++S  
Sbjct: 444 SLKATVVAEKEKILQEQN--------NLKLTEEERQEHIMLTAQLKKEIDEYRMRSNSLS 495

Query: 220 KTTEMKFKPGEEFEED 267
           + TE   K  ++FEE+
Sbjct: 496 EETEDLRKQRQKFEEE 511


>10_08_0308 +
           16660751-16661450,16661656-16661819,16662615-16662800,
           16663297-16663533
          Length = 428

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 114 HRRGSDHPQSRQRCHPDRGAP 176
           HRRG      RQRC   RGAP
Sbjct: 87  HRRGPSLVPGRQRCGGARGAP 107


>09_03_0081 + 12163213-12164088
          Length = 291

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 288 EIRMHIRRQHPQASPEGPR 344
           + R+H++RQ  QA P GPR
Sbjct: 66  QARLHLQRQAAQAGPLGPR 84


>09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242
          Length = 509

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = -3

Query: 336 LLDLLEGVAFECAYGFHL--STVSAVLFELFA 247
           L+D+L G+  +  +GFHL  S + A++ ++FA
Sbjct: 274 LVDVLIGLQGKGGFGFHLDNSKIKAIILDMFA 305


>03_02_0254 +
           6862762-6863663,6863994-6864241,6864323-6864465,
           6864532-6864570,6865403-6865501
          Length = 476

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 168 HGRGDSVGGFAGDQTHADGLH 106
           HG G + G F G + H DG+H
Sbjct: 271 HGFGRTNGQFLGGRAHGDGVH 291


>07_03_1455 - 26659480-26659758,26659907-26660149
          Length = 173

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 163 TVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEE 264
           TV LR    E  L+TSS    TE   K GEEF++
Sbjct: 122 TVSLRPP--ELPLLTSSRLNPTETPHKEGEEFKK 153


>04_04_0657 + 27000894-27001094,27001188-27001544,27002387-27002581
          Length = 250

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 250 EEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVRE 372
           E+F  D A  A   S   F+G  L Q+   PDG      RE
Sbjct: 167 EDFLVDEATAASSSSDGLFQGGLLAQIGGVPDGYAAWAGRE 207


>04_04_0456 -
           25355409-25355751,25356047-25356205,25356317-25356513,
           25356602-25356794,25357044-25358287
          Length = 711

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 105 HEDHRRGSDHPQSRQRCHPDR 167
           H  HRRG  H Q +   HP R
Sbjct: 276 HHSHRRGIRHKQQQHHQHPRR 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,370,743
Number of Sequences: 37544
Number of extensions: 229764
Number of successful extensions: 647
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)