Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317A03f
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    26   2.8  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    25   5.0  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    24   8.7  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +1

Query: 28  RPPQHVAGVAWARCDGRRRPATSLGLWTGRATDVTRLD---DSRPDKRAYP*W 177
           RPPQH+ G   A+ D   R    L   T  A   +RLD   D    KRA+  W
Sbjct: 358 RPPQHIEGSEIAKVD---RAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHW 407


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
          subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 91 SLDAAGRRTGPTRPQP 44
          +LDA GRR  P +P+P
Sbjct: 44 ALDALGRRKAPIKPRP 59


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 119 ARPVQRPSDVAGRRRPSHRAHATPAT 42
           A+PV +P + A  ++PS      P T
Sbjct: 432 AQPVSKPKESAEEQKPSKEPEVKPTT 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,670,486
Number of Sequences: 5004
Number of extensions: 27877
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)