Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS317A03f
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0534 - 4635122-4635380,4635716-4635837                           31   0.40 
12_02_0217 + 15814303-15814905                                         28   2.8  
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874...    27   4.9  
12_02_0694 + 22216756-22216980                                         27   8.6  
11_06_0480 - 24081075-24081723,24083427-24084202                       27   8.6  
01_06_1106 + 34563368-34563679                                         27   8.6  

>08_01_0534 - 4635122-4635380,4635716-4635837
          Length = 126

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 46  AGVAWARCDGRRRPATSLGLWTGRATDVTR 135
           +GV W  C GR    +++G WTG A + TR
Sbjct: 71  SGVKWKSCGGRTGSRSAVGRWTG-AVEATR 99


>12_02_0217 + 15814303-15814905
          Length = 200

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 5   CQGTRVQRDRPNMWLGSRGPGATAG 79
           CQ  R +R    +WLGS G G T G
Sbjct: 173 CQRRRRERRSATVWLGSSGRGKTEG 197


>04_04_0585 -
           26386248-26386271,26386510-26386699,26387363-26387463,
           26387554-26387685,26387759-26387857,26387956-26388127,
           26388217-26388512,26388601-26388726,26388848-26389062,
           26389154-26389225,26389299-26389368,26389441-26389517,
           26389605-26389923,26390034-26390225,26390321-26390551,
           26390585-26390950,26392251-26392313,26392394-26392456,
           26392544-26392642,26393497-26393523,26394299-26394358,
           26395230-26396147,26396243-26397268
          Length = 1645

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 80  RRPSHRAHATPATCWGGRVARGYPG 6
           R P  RA + PAT  G R +R  PG
Sbjct: 224 RSPGRRADSVPATASGERASRQQPG 248


>12_02_0694 + 22216756-22216980
          Length = 74

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -3

Query: 107 QRPSDV--AGRRRPSHRAHATPATCWGGRVARG 15
           +RP+ V  A    P  R     +  WGGR ARG
Sbjct: 24  RRPAAVSFAAAASPGSRGRVALSAAWGGRAARG 56


>11_06_0480 - 24081075-24081723,24083427-24084202
          Length = 474

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 107 QRPSDVAGRRRPSHRAHATPATCWGGRV 24
           +RP  ++ RR  S  + + PA+C GGRV
Sbjct: 62  RRPHLLSLRRPSSSSSSSVPASCGGGRV 89


>01_06_1106 + 34563368-34563679
          Length = 103

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 90  RWTPPAVAPGPRDPSHMLGRSRCTRVPW 7
           R  P A AP P +  H  G +RC R PW
Sbjct: 37  RVPPSASAPPPAELRH--GPNRCRRPPW 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,742,668
Number of Sequences: 37544
Number of extensions: 218193
Number of successful extensions: 834
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)