Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316H12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    22   4.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   5.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.7  

>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
          peptide protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 3  CRFFFLAH*FISAYIIFSTL 62
          C FFFL+   I++Y +  T+
Sbjct: 7  CTFFFLSVILITSYFVTPTM 26


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/38 (21%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +2

Query: 218 LNSVTMKFNSNIETSKISNEIKI---KLIQHYL*HTSV 322
           +  +  K+N+ +++  ISNE+++   +++ H   H+++
Sbjct: 163 MRDIRYKWNAGLQSVGISNEVELPQFRVLGHRQRHSTI 200


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/35 (22%), Positives = 19/35 (54%)
 Frame = +2

Query: 182 IHHKMFDIQIKALNSVTMKFNSNIETSKISNEIKI 286
           + + +F+ + K  ++V +KF       K  +++KI
Sbjct: 101 LRNDLFECENKEKSNVCLKFEEQKRRKKSLDDVKI 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,640
Number of Sequences: 438
Number of extensions: 2320
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)