Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316H11f
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.1  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   1.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   3.2  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   5.6  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   5.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   7.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   7.4  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 15/62 (24%), Positives = 24/62 (38%)
 Frame = +3

Query: 237 YKSLTRHSIEVCEFCDKVFKNRYKSIIHTMTHITIPLIKDSLKQCLSCKLYFPSQDDLKC 416
           Y++ T      CE+C K F  +    +H   H      K+   +C  C+  F     L  
Sbjct: 111 YRTHTGEKPYQCEYCSKSFSVKENLSVHRRIH-----TKERPYKCDVCERAFEHSGKLHR 165

Query: 417 HV 422
           H+
Sbjct: 166 HM 167



 Score = 23.4 bits (48), Expect = 1.4
 Identities = 18/67 (26%), Positives = 23/67 (34%)
 Frame = +3

Query: 270 CEFCDKVFKNRYKSIIHTMTHITIPLIKDSLKQCLSCKLYFPSQDDLKCHVAKKHIKIDY 449
           C  C K F    + +IH  TH       +    C +C   F     LK H      +  Y
Sbjct: 178 CTVCSKTFIQSGQLVIHMRTH-----TGEKPYVCKACGKGFTCSKQLKVHTRTHTGEKPY 232

Query: 450 TSFNGGK 470
           T    GK
Sbjct: 233 TCDICGK 239



 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 267 VCEFCDKVFKNRYKSIIHTMTH 332
           VC+ C K F    +  +HT TH
Sbjct: 205 VCKACGKGFTCSKQLKVHTRTH 226


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 270 CEFCDKVFKNRYKSIIHTMTHITIP 344
           C++C+KV+ +     +H  TH T+P
Sbjct: 19  CKYCEKVYVSLGALKMHIRTH-TLP 42


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 473 AFSTIKTSIVNFDMFLCHVTFQII 402
           A S    +++N D+ L HV FQI+
Sbjct: 378 ALSDRNQNVLNNDLNLEHVNFQIL 401


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +3

Query: 258 SIEVCEFCDKVFKNRYKSIIH 320
           ++ VCEFC++ ++ +     H
Sbjct: 34  TLYVCEFCNRRYRTKNSLTTH 54


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 369 CLSCKLYFPSQDDLKCHVAKKH 434
           C  C     S+  LK HVA KH
Sbjct: 8   CQLCGKVLCSKASLKRHVADKH 29


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 307 LYLFLNTLSQNSQ 269
           +YL+ NT+S N+Q
Sbjct: 377 VYLYQNTMSNNNQ 389


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 307 LYLFLNTLSQNSQ 269
           +YL+ NT+S N+Q
Sbjct: 415 VYLYQNTMSNNNQ 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,175
Number of Sequences: 438
Number of extensions: 2403
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)