Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316H09f
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   5.1  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   6.7  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    25   8.9  

>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 390  FSYLANDIIVLLHLNIC---DIITXYRGKYILSDINVVSLP 503
            FS LA++ +      IC   D+I  YR K IL ++  +SLP
Sbjct: 1113 FSSLADEELGWSAEQICLADDVINEYRRKAILCNLMALSLP 1153


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 235 INQFYILTLIYSLIFTFYL*VYINMYNYIDR 143
           + ++  LT I + ++TF+    +N  NY+D+
Sbjct: 521 VTEYDFLTTINATLYTFFTYKKLNTPNYVDQ 551


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 236 LMSYKGKSHKLLLYREFSFTSVKNLNGFSIVPVYFY 343
           L+S  G+++ L+L + F F  +  L G S+VP + +
Sbjct: 202 LLSRPGQNN-LVLKKRFGFVKLAFLTGSSLVPCFAF 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,025,513
Number of Sequences: 5004
Number of extensions: 39295
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)