Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS316H08f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 44 1e-05
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 44 1e-05
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 44 1e-05
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 44 1e-05
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 44 1e-05
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 44 1e-05
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 44 1e-05
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 44 1e-05
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 44 1e-05
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 44 1e-05
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 44 1e-05
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 26 3.0
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 26 3.9
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 26 3.9
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 25 5.2
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 25 5.2
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 25 6.8
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 25 6.8
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 25 9.0
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 9.0
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 44.0 bits (99), Expect = 1e-05
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +1
Query: 103 KCKFLTTEVEYLSRAISNGQVKPSEHKVEALVNARVPSNVKEVRQF*VSREILGVISPAN 282
KC+F ++V+++ IS P + ++ ++ + P N KE+RQF S L P
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659
Query: 283 QFKRHVLQI*LAKSVHFIWGEDK-ERVRKVIERLTSEPVV 399
H L L K V + W + + + + + L S PV+
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 392 RLFLQDYDFELEYRKGTALSHADYFSRNAVNVYEIPK 502
+LFLQD++FE+ YR G+A AD SR IPK
Sbjct: 805 QLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPK 841
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 44.0 bits (99), Expect = 1e-05
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +1
Query: 103 KCKFLTTEVEYLSRAISNGQVKPSEHKVEALVNARVPSNVKEVRQF*VSREILGVISPAN 282
KC+F ++V+++ IS P + ++ ++ + P N KE+RQF S L P
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659
Query: 283 QFKRHVLQI*LAKSVHFIWGEDK-ERVRKVIERLTSEPVV 399
H L L K V + W + + + + + L S PV+
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 392 RLFLQDYDFELEYRKGTALSHADYFSRNAVNVYEIPK 502
+LFLQD++FE+ YR G+A AD SR IPK
Sbjct: 805 QLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPK 841
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 44.0 bits (99), Expect = 1e-05
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +1
Query: 103 KCKFLTTEVEYLSRAISNGQVKPSEHKVEALVNARVPSNVKEVRQF*VSREILGVISPAN 282
KC+F ++V+++ IS P + ++ ++ + P N KE+RQF S L P
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659
Query: 283 QFKRHVLQI*LAKSVHFIWGEDK-ERVRKVIERLTSEPVV 399
H L L K V + W + + + + + L S PV+
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 392 RLFLQDYDFELEYRKGTALSHADYFSRNAVNVYEIPK 502
+LFLQD++FE+ YR G+A AD SR IPK
Sbjct: 805 QLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPK 841
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 44.0 bits (99), Expect = 1e-05
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +1
Query: 103 KCKFLTTEVEYLSRAISNGQVKPSEHKVEALVNARVPSNVKEVRQF*VSREILGVISPAN 282
KC+F ++V+++ IS P + ++ ++ + P N KE+RQF S L P
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659
Query: 283 QFKRHVLQI*LAKSVHFIWGEDK-ERVRKVIERLTSEPVV 399
H L L K V + W + + + + + L S PV+
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 392 RLFLQDYDFELEYRKGTALSHADYFSRNAVNVYEIPK 502
+LFLQD++FE+ YR G+A AD SR IPK
Sbjct: 805 QLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPK 841
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 44.0 bits (99), Expect = 1e-05
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +1
Query: 103 KCKFLTTEVEYLSRAISNGQVKPSEHKVEALVNARVPSNVKEVRQF*VSREILGVISPAN 282
KC+F ++V+++ IS P + ++ ++ + P N KE+RQF S L P
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659
Query: 283 QFKRHVLQI*LAKSVHFIWGEDK-ERVRKVIERLTSEPVV 399
H L L K V + W + + + + + L S PV+
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 392 RLFLQDYDFELEYRKGTALSHADYFSRNAVNVYEIPK 502
+LFLQD++FE+ YR G+A AD SR IPK
Sbjct: 805 QLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPK 841
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 44.0 bits (99), Expect = 1e-05
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +1
Query: 103 KCKFLTTEVEYLSRAISNGQVKPSEHKVEALVNARVPSNVKEVRQF*VSREILGVISPAN 282
KC+F ++V+++ IS P + ++ ++ + P N KE+RQF S L P
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659
Query: 283 QFKRHVLQI*LAKSVHFIWGEDK-ERVRKVIERLTSEPVV 399
H L L K V + W + + + + + L S PV+
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 392 RLFLQDYDFELEYRKGTALSHADYFSRNAVNVYEIPK 502
+LFLQD++FE+ YR G+A AD SR IPK
Sbjct: 805 QLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPK 841
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 44.0 bits (99), Expect = 1e-05
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +1
Query: 103 KCKFLTTEVEYLSRAISNGQVKPSEHKVEALVNARVPSNVKEVRQF*VSREILGVISPAN 282
KC+F ++V+++ IS P + ++ ++ + P N KE+RQF S L P
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659
Query: 283 QFKRHVLQI*LAKSVHFIWGEDK-ERVRKVIERLTSEPVV 399
H L L K V + W + + + + + L S PV+
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 392 RLFLQDYDFELEYRKGTALSHADYFSRNAVNVYEIPK 502
+LFLQD++FE+ YR G+A AD SR IPK
Sbjct: 805 QLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPK 841
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 44.0 bits (99), Expect = 1e-05
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +1
Query: 103 KCKFLTTEVEYLSRAISNGQVKPSEHKVEALVNARVPSNVKEVRQF*VSREILGVISPAN 282
KC+F ++V+++ IS P + ++ ++ + P N KE+RQF S L P
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659
Query: 283 QFKRHVLQI*LAKSVHFIWGEDK-ERVRKVIERLTSEPVV 399
H L L K V + W + + + + + L S PV+
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 392 RLFLQDYDFELEYRKGTALSHADYFSRNAVNVYEIPK 502
+LFLQD++FE+ YR G+A AD SR IPK
Sbjct: 805 QLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPK 841
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 44.0 bits (99), Expect = 1e-05
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +1
Query: 103 KCKFLTTEVEYLSRAISNGQVKPSEHKVEALVNARVPSNVKEVRQF*VSREILGVISPAN 282
KC+F ++V+++ IS P + ++ ++ + P N KE+RQF S L P
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659
Query: 283 QFKRHVLQI*LAKSVHFIWGEDK-ERVRKVIERLTSEPVV 399
H L L K V + W + + + + + L S PV+
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 392 RLFLQDYDFELEYRKGTALSHADYFSRNAVNVYEIPK 502
+LFLQD++FE+ YR G+A AD SR IPK
Sbjct: 805 QLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPK 841
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 44.0 bits (99), Expect = 1e-05
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +1
Query: 103 KCKFLTTEVEYLSRAISNGQVKPSEHKVEALVNARVPSNVKEVRQF*VSREILGVISPAN 282
KC+F ++V+++ IS P + ++ ++ + P N KE+RQF S L P
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659
Query: 283 QFKRHVLQI*LAKSVHFIWGEDK-ERVRKVIERLTSEPVV 399
H L L K V + W + + + + + L S PV+
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 392 RLFLQDYDFELEYRKGTALSHADYFSRNAVNVYEIPK 502
+LFLQD++FE+ YR G+A AD SR IPK
Sbjct: 805 QLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPK 841
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 44.0 bits (99), Expect = 1e-05
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +1
Query: 103 KCKFLTTEVEYLSRAISNGQVKPSEHKVEALVNARVPSNVKEVRQF*VSREILGVISPAN 282
KC+F ++V+++ IS P + ++ ++ + P N KE+RQF S L P
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659
Query: 283 QFKRHVLQI*LAKSVHFIWGEDK-ERVRKVIERLTSEPVV 399
H L L K V + W + + + + + L S PV+
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 392 RLFLQDYDFELEYRKGTALSHADYFSRNAVNVYEIPK 502
+LFLQD++FE+ YR G+A AD SR IPK
Sbjct: 805 QLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPK 841
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -1
Query: 167 FT*PLLIALLKYSTSVVRNLHFQVDGKTRQSCKDLAERLQALGNCF 30
F PL+IA+ K N+H ++LA+++Q GN F
Sbjct: 303 FIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKF 348
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -3
Query: 351 FIFTP--NEMYTFCELDLQYMPLELISRRYDA*NFPRDLKLSY 229
F +TP N + T C L+Y+ + +++ + +A PR+ + SY
Sbjct: 248 FFYTPYLNTIQTSCPWLLRYLTVAVVTNQNNANQKPRNPRQSY 290
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 112 IYTFRLMEKPARVARTSRSVYKPSVIVFDD 23
IY++ + P R SR + K ++VFD+
Sbjct: 205 IYSYHYLLDPKIAERVSRELSKDCIVVFDE 234
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 148 ISNGQVKPSEHKVEALVNARVPSNVKEVRQ 237
+SN +VKP++H E VN ++ S + + Q
Sbjct: 4 VSNVRVKPNQHPYEKEVNGKLMSQEEILSQ 33
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 463 VVCMG*RGPLTIFKLKVIVLKK-QPAHWLIAQ*PFELF 353
V C+ R PLTI KL+V++ K P + Q P ++F
Sbjct: 189 VACLLLRLPLTIHKLEVLIRKNIIPYYRAYKQIPLKIF 226
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 118 TTEVEYLSRAISNGQVKPSEHKVEALVNARVPSNVKEV 231
TT+ + AIS+ Q+K + E L+ PS EV
Sbjct: 36 TTKPSTVKNAISSSQIKNEKFSQEVLLQFNDPSFTSEV 73
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 119 VRNLHFQVDGKTRQSCKDLAERLQALGNCF 30
V H +++Q +LAE+ +A+GN F
Sbjct: 4 VETTHMNAGTESQQEPAELAEKQKAIGNAF 33
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -1
Query: 464 SSLHGIARSPYDIQAQSHSLEETTGSLVNRSMTFRTLSLSSPQMKCTL 321
S+LH + S D +H+LEET G + S PQ TL
Sbjct: 163 STLHDMGFS--DDSVNTHALEETNGDVTRAIEKIVQHGSSKPQKPSTL 208
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 275 RLISSSGMYCKSNSQKVY 328
+L SS + CKSNS KVY
Sbjct: 1437 KLSSSDPVLCKSNSCKVY 1454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,209
Number of Sequences: 5004
Number of extensions: 39283
Number of successful extensions: 121
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -