Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316H06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor pr...    22   3.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   3.3  
AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor pr...    22   3.3  

>AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 76  VSSSTHLSIKKKTRVRKFSQVESVSS 153
           VS+ T +S+K ++ V   SQ+ S+ S
Sbjct: 22  VSAKTSISVKGESNVDVVSQINSLVS 47


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 470 GESEYSCR*ISRMYTCKKKCY*HS 399
           GE  Y C+   + +TC K+   H+
Sbjct: 200 GEKPYVCKACGKGFTCSKQLKVHT 223


>AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 76  VSSSTHLSIKKKTRVRKFSQVESVSS 153
           VS+ T +S+K ++ V   SQ+ S+ S
Sbjct: 22  VSAKTSISVKGESNVDVVSQINSLVS 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,889
Number of Sequences: 438
Number of extensions: 2283
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)