Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS316H04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 31 0.10
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 27 1.7
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ... 25 5.2
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 25 5.2
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 6.8
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 6.8
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 25 6.8
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 25 9.0
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 25 9.0
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 9.0
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 31.1 bits (67), Expect = 0.10
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 84 VGERHAGRGPGQHAPGRLRVRAGAG-PADSHHQAGALSLALRLHEPGHHQPAAFTS 248
+G+R PG P L VR+G P+ SHH + SL L H QP + S
Sbjct: 52 LGQRRPSFLPGVSVPDTLSVRSGFSIPSSSHHPSAVPSL-LSQHRLQQPQPRLYPS 106
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -1
Query: 431 LLAAMLFFRRRAQYLSSFRSSGTNCFRDFLIIGCGFSSSSEKARVRGSKSRPDDAIENVE 252
L + ++ R + FR +GTNC R F F++ + + R K+R +EN E
Sbjct: 59 LTSTLVKIWNREGLIGFFRGNGTNCLRAFPYGAVQFATFN-MLKQRALKNRSHQNLENHE 117
>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 49 PDLKYVDLDEFLSENGMPGEGLGSTHLGGSAFGPALGLQTPITK 180
PDL DL E+L G+P + H+ GSA A T + K
Sbjct: 367 PDLLATDLAEYLVRKGLPFR--QTHHISGSAVRMAEERNTTLDK 408
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 67 DLDEFLSENGMPGEGLGSTHLGGSAFGPALGLQTPITKRERSPSPSDCMSPDTINPPL 240
++ EF + +G+P +GL + + A ++ E PSD D INP L
Sbjct: 61 EMREFFNFDGLPDQGLNLPSIAPPSLSHASSPNLSNSQDEAECLPSD-RQQDYINPSL 117
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 40 AGSCPTGWDPRR 5
AG P GWDP+R
Sbjct: 1143 AGQIPLGWDPKR 1154
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 181 RERSPSPSDCMSPDTINPPLSPADSTFSMASSGRDFDPRTR-AFSDEELKPQPMIKKSR 354
R SP+P++ M+ +N PL+ S AS+ +F T FS P P + S+
Sbjct: 193 RPSSPNPAEHMTGAYVNTPLNQPPS--YAASTQPEFQQTTSPIFSSSSTPPPPPPRPSQ 249
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 253 STFSMASSGRDFDPRTRAFSDEELK 327
STF + + RDFD +T DE K
Sbjct: 36 STFLQSLTDRDFDVKTSYIKDESAK 60
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 363 ELFPGLLDHRLRLQLF 316
+LF G L+ R+RLQLF
Sbjct: 888 QLFGGALEKRIRLQLF 903
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 167 VCRPSAGPNAEPPRCVLPRPSPGMPFSDRNSSRST 63
+ RPS+ N PP + RP + + SR+T
Sbjct: 389 IVRPSSSINRRPPSSINQRPPSNLRILAPSRSRAT 423
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 158 PSAGPNAEPPRCVLPRPSPGMPFSDR 81
P+A P+ PPR +P P PG S +
Sbjct: 581 PNASPSVIPPR--VPTPVPGRTLSPK 604
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.134 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,104
Number of Sequences: 5004
Number of extensions: 38250
Number of successful extensions: 117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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