Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316H02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    28   0.73 
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   1.3  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    26   3.9  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   3.9  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    25   5.2  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   5.2  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    25   9.0  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    25   9.0  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    25   9.0  

>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 113 HRHEGTEVVRGRYLHHGSAQQRTGGSRNF*TSTTTDKHER 232
           H+    EV+R   L H +A+ +  G  N   +T+T KH++
Sbjct: 273 HQDTQNEVLRDIVLEHPTAKAQDTGESNKDNNTSTSKHKK 312


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 383 FLPSGSFDSALWAISNSRTTFQPASALCLS 472
           +L S + D+ LWA  +++T+  PA  +C+S
Sbjct: 260 WLKSQNIDAELWAEEDAKTSQHPAIWICVS 289


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 192 RLPPVRC*AEPW*RYRP 142
           RLPP+ C AEP+ R +P
Sbjct: 65  RLPPINCLAEPFNRPQP 81


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = -2

Query: 97  CSDDTTLAFDEDV----TVFLVFVYLVGYI 20
           C+D  +L   E +    T++L  VY++GYI
Sbjct: 319 CTDSVSLLITEPIVVCFTLYLTVVYIIGYI 348


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = -1

Query: 356 DGFVQGVTDDSLHDAAILFTFADLSDLFSARILVCELAVSLCARAYLSSLTFRNCDFL 183
           D F+  V + SLHDA ++   A  ++L  A    CE+ +S   R Y  +++ +  +F+
Sbjct: 384 DQFIAEV-ERSLHDAIMIVKHALKNNLVVAGGGACEMELSKYLRDYSLTISGKQQNFI 440


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 173 QRTGGSRNF*TSTTTDKHERTETPRAR 253
           +   GSRN  +ST + +H+ ++ PR+R
Sbjct: 815 KHASGSRNSISSTKSPQHKLSDQPRSR 841


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 351 SIRVKILGASYFFLRDLSTLPYGQYLTLEQLFSQL 455
           SIR+       F L+D+  LP  +Y T E L   L
Sbjct: 507 SIRIHNPDIQRFVLKDVLKLPENRYATFEHLIRVL 541


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = -2

Query: 187 SSCSLLSRAVVKVSATNHFCPFMTMSCGGLCSDDTTLAFDEDVTVFLVFVYLVGYIFVTI 8
           +S S+LS + +  S++       T    G     TT   D+ +    V +   GYI  T+
Sbjct: 129 TSSSILSNSTIPSSSSISASTITTTIISGSTQFTTTFV-DQSIDTVEVVIPTAGYITTTL 187

Query: 7   TN 2
           T+
Sbjct: 188 TS 189


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 271 ENRSERSAKVKRIAASCKESSVTP 342
           E R +++ + KRIAAS +++S  P
Sbjct: 63  EQRRQQAMEAKRIAASTRQTSERP 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,975,112
Number of Sequences: 5004
Number of extensions: 35533
Number of successful extensions: 104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)