Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316H02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0470 - 24647118-24647267,24647387-24647528,24649070-24650256     29   3.0  
10_06_0117 - 10948723-10948774,10949169-10949286,10949350-109494...    28   4.0  
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936...    28   5.2  
04_01_0061 + 617966-618025,618619-618780                               28   5.2  
05_07_0195 - 28331445-28331641,28331841-28331934,28332019-283320...    27   6.9  
02_04_0005 - 18843061-18843201,18843309-18843440,18844457-188453...    27   6.9  
06_03_1312 - 29246828-29246899,29247011-29247058,29247138-292472...    27   9.1  

>03_05_0470 - 24647118-24647267,24647387-24647528,24649070-24650256
          Length = 492

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -3

Query: 411 AESKDPEGRNMRHRVSSPG--WICPGRDRRLFT*CGNSLHLRGSLRSVLGADTCVRARGV 238
           A+++ P  RN RH  +  G  +  P ++ R  +   N+  L  SLR   GAD   R   V
Sbjct: 47  AKNRSPRARN-RHAAAGDGGGYGSPEQEGRGESSLPNAEALASSLRDCGGADGVRRVHAV 105

Query: 237 SVRS 226
           +VRS
Sbjct: 106 AVRS 109


>10_06_0117 -
           10948723-10948774,10949169-10949286,10949350-10949421,
           10949772-10949866,10950183-10950322
          Length = 158

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 311 PHHVKSRRSRPGQIHPGEDTRCLIFLPSGSFDSALWAISNSRTTFQP 451
           P +V+S R  P      +   C + +PS   D   WA + +R   QP
Sbjct: 46  PSNVESNRKGPAGTSKKKKRGCCVDIPSSESDEEDWAPTPTREDNQP 92


>09_04_0037 +
           13992103-13992624,13993001-13993180,13993423-13993691,
           13994120-13995773
          Length = 874

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +2

Query: 98  KPAARHRHEGTEVVRGRYLHHGSAQQRTGGSRNF*TSTTTDKHERTETPR 247
           +PAA HRH       G         +R G      T+TTT +   T T R
Sbjct: 15  EPAAAHRHRAERAAAGEPATRTHRTERAGEPAAATTTTTTRRPPPTTTER 64


>04_01_0061 + 617966-618025,618619-618780
          Length = 73

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 365 LHPDGFVQGVTDDSLHDAAILFTFAD 288
           +H DG V+GV  D LH+A +L    D
Sbjct: 35  VHVDGDVEGVHRDVLHEAELLVEIVD 60


>05_07_0195 -
           28331445-28331641,28331841-28331934,28332019-28332099,
           28332186-28332234,28332334-28332419,28332513-28332740,
           28332819-28332857,28332958-28333047,28333207-28333269,
           28333371-28333449,28333539-28333585,28333668-28333730,
           28333814-28333864,28333977-28334060,28334162-28334226,
           28334559-28334676,28334775-28334825,28335228-28335314,
           28335633-28335712,28336676-28336793
          Length = 589

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 320 VKSRRSRPGQIHPGEDTRCLIFLPSGS--FDSALWAISNSRTTFQ 448
           +K R +   +  P   T C+IF+P GS     A   + + RT FQ
Sbjct: 397 MKLRGANSTEFDPATTTPCVIFMPEGSKTHMGATMRLGSRRTFFQ 441


>02_04_0005 -
           18843061-18843201,18843309-18843440,18844457-18845315,
           18845884-18845973,18846748-18846869,18846950-18847049,
           18847151-18847205,18847275-18847365,18847453-18847572,
           18847681-18847780,18847890-18848018,18848099-18848201,
           18848670-18848743,18848848-18848933,18849297-18849358,
           18849454-18849541,18849937-18850029
          Length = 814

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 311 PHHVKSRRSRPGQIHPGEDTRCLIFLPSGSFDSALWAISN 430
           PH VK+   R G  +P  D    ++LPS S  S   +  N
Sbjct: 472 PHRVKTATDRAGGGNPEWDAPLRLYLPSSSSSSPATSSDN 511


>06_03_1312 -
           29246828-29246899,29247011-29247058,29247138-29247215,
           29247304-29247360,29247597-29247662,29247750-29247839,
           29248136-29248213,29248318-29248422,29248534-29248669,
           29248778-29248853,29248973-29249177,29249289-29249501,
           29250073-29250795
          Length = 648

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 123 KGQKWFVADTFTTALLNNEQEEVAISERQRRQISTSAQRHRELA 254
           KG++   ++T TTA+L  E+EEV + E++  +     +R  + A
Sbjct: 103 KGKRSSSSETRTTAVL-EEEEEVEVKEKKTEEDGEEGKRKEKAA 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,203,507
Number of Sequences: 37544
Number of extensions: 255188
Number of successful extensions: 701
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)