Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316H02f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY847597-1|AAW32540.1|  664|Homo sapiens lamin A/C transcript va...    34   0.35 
Z99716-2|CAI41689.1|  177|Homo sapiens protein ( Human DNA seque...    32   1.1  
X03445-1|CAA27174.1|  572|Homo sapiens protein ( Human mRNA for ...    32   1.4  
X03444-1|CAA27173.1|  702|Homo sapiens protein ( Human mRNA for ...    32   1.4  
M13452-1|AAA36160.1|  515|Homo sapiens protein ( Human lamin A m...    32   1.4  
M13451-1|AAA36164.1|  572|Homo sapiens protein ( Human lamin C m...    32   1.4  
BC014507-1|AAH14507.1|  664|Homo sapiens lamin A/C protein.            32   1.4  
BC003162-1|AAH03162.1|  572|Homo sapiens lamin A/C protein.            32   1.4  
BC000511-1|AAH00511.1|  572|Homo sapiens lamin A/C protein.            32   1.4  
AY847595-1|AAW32538.1|  664|Homo sapiens lamin A/C transcript va...    32   1.4  
AY357727-1|AAR29466.1|  614|Homo sapiens progerin protein.             32   1.4  
AL135927-8|CAI15527.1|  491|Homo sapiens lamin A/C protein.            32   1.4  
AL135927-7|CAI15526.1|  513|Homo sapiens lamin A/C protein.            32   1.4  
AL135927-4|CAI15522.1|  664|Homo sapiens lamin A/C protein.            32   1.4  
AL135927-3|CAI15523.1|  614|Homo sapiens lamin A/C protein.            32   1.4  
AL135927-2|CAI15521.1|  572|Homo sapiens lamin A/C protein.            32   1.4  

>AY847597-1|AAW32540.1|  664|Homo sapiens lamin A/C transcript
           variant 1 protein.
          Length = 664

 Score = 33.9 bits (74), Expect = 0.35
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 102 PPHDIVMKGQK-WFVADTFTTALLNNEQEEVAISERQR 212
           PP D+V K Q  W   ++  TAL+N+  EEVA+S+  R
Sbjct: 508 PPTDLVWKAQNTWGCGNSLRTALINSTGEEVAMSKLVR 545


>Z99716-2|CAI41689.1|  177|Homo sapiens protein ( Human DNA sequence
           from clone CTA-250D10 on chromosome 22 Contains  the
           genes for SREBF2 (sterol regulatory element binding
           transcription factosterol regulatory element binding
           transcription factor 2).
          Length = 177

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 411 AESKDPEGRNMRHRVSSPGWICPGRD 334
           +E+  P G    H   +PGW+CPG D
Sbjct: 149 SEAAGPPGATASHPGPTPGWLCPGAD 174


>X03445-1|CAA27174.1|  572|Homo sapiens protein ( Human mRNA for
           nuclear envelope protein lamin C precursor. ).
          Length = 572

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 102 PPHDIVMKGQK-WFVADTFTTALLNNEQEEVAISERQR 212
           PP D+V K Q  W   ++  TAL+N+  EEVA+ +  R
Sbjct: 508 PPTDLVWKAQNTWGCGNSLRTALINSTGEEVAMRKLVR 545


>X03444-1|CAA27173.1|  702|Homo sapiens protein ( Human mRNA for
           nuclear envelope protein lamin A precursor. ).
          Length = 702

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 102 PPHDIVMKGQK-WFVADTFTTALLNNEQEEVAISERQR 212
           PP D+V K Q  W   ++  TAL+N+  EEVA+ +  R
Sbjct: 508 PPTDLVWKAQNTWGCGNSLRTALINSTGEEVAMRKLVR 545


>M13452-1|AAA36160.1|  515|Homo sapiens protein ( Human lamin A
           mRNA, 3'end. ).
          Length = 515

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 102 PPHDIVMKGQK-WFVADTFTTALLNNEQEEVAISERQR 212
           PP D+V K Q  W   ++  TAL+N+  EEVA+ +  R
Sbjct: 359 PPTDLVWKAQNTWGCGNSLRTALINSTGEEVAMRKLVR 396


>M13451-1|AAA36164.1|  572|Homo sapiens protein ( Human lamin C
           mRNA, complete cds. ).
          Length = 572

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 102 PPHDIVMKGQK-WFVADTFTTALLNNEQEEVAISERQR 212
           PP D+V K Q  W   ++  TAL+N+  EEVA+ +  R
Sbjct: 508 PPTDLVWKAQNTWGCGNSLRTALINSTGEEVAMRKLVR 545


>BC014507-1|AAH14507.1|  664|Homo sapiens lamin A/C protein.
          Length = 664

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 102 PPHDIVMKGQK-WFVADTFTTALLNNEQEEVAISERQR 212
           PP D+V K Q  W   ++  TAL+N+  EEVA+ +  R
Sbjct: 508 PPTDLVWKAQNTWGCGNSLRTALINSTGEEVAMRKLVR 545


>BC003162-1|AAH03162.1|  572|Homo sapiens lamin A/C protein.
          Length = 572

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 102 PPHDIVMKGQK-WFVADTFTTALLNNEQEEVAISERQR 212
           PP D+V K Q  W   ++  TAL+N+  EEVA+ +  R
Sbjct: 508 PPTDLVWKAQNTWGCGNSLRTALINSTGEEVAMRKLVR 545


>BC000511-1|AAH00511.1|  572|Homo sapiens lamin A/C protein.
          Length = 572

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 102 PPHDIVMKGQK-WFVADTFTTALLNNEQEEVAISERQR 212
           PP D+V K Q  W   ++  TAL+N+  EEVA+ +  R
Sbjct: 508 PPTDLVWKAQNTWGCGNSLRTALINSTGEEVAMRKLVR 545


>AY847595-1|AAW32538.1|  664|Homo sapiens lamin A/C transcript
           variant 1 protein.
          Length = 664

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 102 PPHDIVMKGQK-WFVADTFTTALLNNEQEEVAISERQR 212
           PP D+V K Q  W   ++  TAL+N+  EEVA+ +  R
Sbjct: 508 PPTDLVWKAQNTWGCGNSLRTALINSTGEEVAMRKLVR 545


>AY357727-1|AAR29466.1|  614|Homo sapiens progerin protein.
          Length = 614

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 102 PPHDIVMKGQK-WFVADTFTTALLNNEQEEVAISERQR 212
           PP D+V K Q  W   ++  TAL+N+  EEVA+ +  R
Sbjct: 508 PPTDLVWKAQNTWGCGNSLRTALINSTGEEVAMRKLVR 545


>AL135927-8|CAI15527.1|  491|Homo sapiens lamin A/C protein.
          Length = 491

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 102 PPHDIVMKGQK-WFVADTFTTALLNNEQEEVAISERQR 212
           PP D+V K Q  W   ++  TAL+N+  EEVA+ +  R
Sbjct: 427 PPTDLVWKAQNTWGCGNSLRTALINSTGEEVAMRKLVR 464


>AL135927-7|CAI15526.1|  513|Homo sapiens lamin A/C protein.
          Length = 513

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 102 PPHDIVMKGQK-WFVADTFTTALLNNEQEEVAISERQR 212
           PP D+V K Q  W   ++  TAL+N+  EEVA+ +  R
Sbjct: 449 PPTDLVWKAQNTWGCGNSLRTALINSTGEEVAMRKLVR 486


>AL135927-4|CAI15522.1|  664|Homo sapiens lamin A/C protein.
          Length = 664

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 102 PPHDIVMKGQK-WFVADTFTTALLNNEQEEVAISERQR 212
           PP D+V K Q  W   ++  TAL+N+  EEVA+ +  R
Sbjct: 508 PPTDLVWKAQNTWGCGNSLRTALINSTGEEVAMRKLVR 545


>AL135927-3|CAI15523.1|  614|Homo sapiens lamin A/C protein.
          Length = 614

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 102 PPHDIVMKGQK-WFVADTFTTALLNNEQEEVAISERQR 212
           PP D+V K Q  W   ++  TAL+N+  EEVA+ +  R
Sbjct: 508 PPTDLVWKAQNTWGCGNSLRTALINSTGEEVAMRKLVR 545


>AL135927-2|CAI15521.1|  572|Homo sapiens lamin A/C protein.
          Length = 572

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 102 PPHDIVMKGQK-WFVADTFTTALLNNEQEEVAISERQR 212
           PP D+V K Q  W   ++  TAL+N+  EEVA+ +  R
Sbjct: 508 PPTDLVWKAQNTWGCGNSLRTALINSTGEEVAMRKLVR 545


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,762,635
Number of Sequences: 237096
Number of extensions: 1387092
Number of successful extensions: 3019
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3019
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)